Non-Coding RNA Search

Ss1.1-rhea19_o11.5

Sequence:


               
               AAGATCTGGGAGGTGGTGGGAGTCCCTACAGAGGATACCTGGCCTGGGGTTTCCAAGCTA
CCTAACTACAATCCAGAATGGTTCCCACTGCCTAAGCCTCCGAGCCTTCAGGATGTCTGG
CACAGGTTGTGCAGGGCTCCTGAAGCGGAAGACCTGGCCTCCCAAATGCTGAAAGGCTTT
CCCAGAGACCGCGTGTCCGCCCAGGAAGCGCTGGTTCACGATTATTTCAGTGTGCTGCCA
GCTCAGCTGCACCAGCTTCCTGACGAGGAGTCTTTGTTTACAGTTTCAGGGGTGAGGCTA
AAGCCAGAAATGTGTGACCTTTTGGCTTCCTACCGGAAAGGTCATCACCCGGCCGAGTTT
AGCAAATGCTGGTGAAAAGAAAGGGCGAGATCACCAAGATCTTCCAGGGCTCCTTTACTG
CTGATTCTGTTTTAATTTGCTTCCGCTTACTAAGAAGCTTCAACTCTAACTCCACACTGG
ACCAAGGGTTTTATACCATCACCTGTGCAATGAAATATTGTAAATATGATGCTGAAGGCA
ACAGTACATAATACTTGAAGAAAAAAGCAATGACAGGTTATTGAAGTTGTCATTTGCCTA
GAATGTAAGAGTGATTGGCTCAGAAATTAGACCTAGACTGAAATCATCTTGGAAGAGGAC
TTCTGAATAATTTCAGGCACTTCTTTATTTGATAGAGAGACCCCTGGGCCAGAAGGAGAA
CGGGACAGATGGAAAACCAACAAGTGAAACTTTGCAGACAGAGCTGGTGCTTGAAGAGGC
TGTCAATCCTATGTTCACTTACAGTTTCCTCCAACAAAAGGACTTCTGTGGCAAGGAGAG
AAGTCTAAAGTTTAGAAAAGTCTCTGGGGAAGGTGATTTCTTGGATAAAGTTGTCAACAA
AAGGACTTGCTTAAGACTCTTTGTTATGATGTCCTAGGGGGCACTTCTTCCTTCACTAAC
TGGATTATCAAGACATATTACCTACCACCCCACCCCAGCCAGATTTTAGGAGTTCGGATT
AAGCTGCTGTTAGGATTAAATTTCAAACTGTCTCCTTCTACTGAGTCTTAATTGTCTGGG
ATGTTAGCAAAGTGATGAGGAATCTCAGCTCTGATTTGATGGCAGAGATACTGAATAGAT
AGATAAGAGCAAAGAGCTCCAAAGTTGTAATTTAAGTCCTGTTGCACCATCAGACACACA
TGCGTGTGTGCACACACATAAGCCTCAAATAAAATGAGAGATCTGTCTCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATCTGGGAGGTGGTGGGAGTCCCTACAGAGGATACCTGGCCTGGGGTTTCCAAGCTA
CCTAACTACAATCCAGAATGGTTCCCACTGCCTAAGCCTCCGAGCCTTCAGGATGTCTGG
CACAGGTTGTGCAGGGCTCCTGAAGCGGAAGACCTGGCCTCCCAAATGCTGAAAGGCTTT
CCCAGAGACCGCGTGTCCGCCCAGGAAGCGCTGGTTCACGATTATTTCAGTGTGCTGCCA
GCTCAGCTGCACCAGCTTCCTGACGAGGAGTCTTTGTTTACAGTTTCAGGGGTGAGGCTA
AAGCCAGAAATGTGTGACCTTTTGGCTTCCTACCGGAAAGGTCATCACCCGGCCGAGTTT
AGCAAATGCTGGTGAAAAGAAAGGGCGAGATCACCAAGATCTTCCAGGGCTCCTTTACTG
CTGATTCTGTTTTAATTTGCTTCCGCTTACTAAGAAGCTTCAACTCTAACTCCACACTGG
ACCAAGGGTTTTATACCATCACCTGTGCAATGAAATATTGTAAATATGATGCTGAAGGCA
ACAGTACATAATACTTGAAGAAAAAAGCAATGACAGGTTATTGAAGTTGTCATTTGCCTA
GAATGTAAGAGTGATTGGCTCAGAAATTAGACCTAGACTGAAATCATCTTGGAAGAGGAC
TTCTGAATAATTTCAGGCACTTCTTTATTTGATAGAGAGACCCCTGGGCCAGAAGGAGAA
CGGGACAGATGGAAAACCAACAAGTGAAACTTTGCAGACAGAGCTGGTGCTTGAAGAGGC
TGTCAATCCTATGTTCACTTACAGTTTCCTCCAACAAAAGGACTTCTGTGGCAAGGAGAG
AAGTCTAAAGTTTAGAAAAGTCTCTGGGGAAGGTGATTTCTTGGATAAAGTTGTCAACAA
AAGGACTTGCTTAAGACTCTTTGTTATGATGTCCTAGGGGGCACTTCTTCCTTCACTAAC
TGGATTATCAAGACATATTACCTACCACCCCACCCCAGCCAGATTTTAGGAGTTCGGATT
AAGCTGCTGTTAGGATTAAATTTCAAACTGTCTCCTTCTACTGAGTCTTAATTGTCTGGG
ATGTTAGCAAAGTGATGAGGAATCTCAGCTCTGATTTGATGGCAGAGATACTGAATAGAT
AGATAAGAGCAAAGAGCTCCAAAGTTGTAATTTAAGTCCTGTTGCACCATCAGACACACA
TGCGTGTGTGCACACACATAAGCCTCAAATAAAATGAGAGATCTGTCTCAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62630169|gb|AAX88914.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62630169|gb|AAX88914.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               904-1260, gnl|bosTau2|chr21 (10455162-10455511)
               

               
               904-1260, gnl|Hg17|chr2 (202584024-202584374)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               904-1260, gnl|bosTau2|chr21 (10455162-10455511)
               

               
               904-1260, gnl|Hg17|chr2 (202584024-202584374)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               hlv (0.139256)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               hlv (0.139256)
               

               
               spc (0.113366)

	904-1260, gnl\|bosTau2\|chr21 (10455162-10455511)
	904-1260, gnl\|Hg17\|chr2 (202584024-202584374)