Non-Coding RNA Search

Ss1.1-rhea20_m24.5

Sequence:


               
               CTGTTGCGAGGTGTCAGCAACCGGCTGTGATATTTATTGATGAAATTGATTCCCTATTAT
CTCAGCGGGGAGATGGGGAGCACGAATCTTCTAGAAGGATAAAAACCGAATTTCTGGTTC
AGCTGGATGGAGCAGCCACATCTTCGGAAGATCGCATCCTAGTGGTGGGAGCGACCAACC
GGCCACAGGAGATTGACGAGGCTGCCCGGAGAAGGTTGGTGAAAAGGCTTTACATTCCCC
TCCCGGAAGCGTCAGCCAGGAAGCAGATAGTAGTTAATCTGATGTCCAGGGAGCAGTGCT
GCCTCAGCGAGGAGGAAATCGACCTGGTCGTGGGGCGCTCAGATGGGTTCTCGGGCGCCG
ACATGACGCAGCTGTGCAGGGAGGCGTCGCTTGGCCCTATCCGCAGTTTACAGGCTGCAG
ACATTGCCACCATAACACCGGATCAGGTTCGACCGATAGCTTTCAGTGACTTTGAAAATG
CGTTTAGGACTGTGCGACCAAGTGTGTCTCCAGAAGATTTACAGCTTTATGAAAACTGGA
ACAGGACGTTTGGGTGTGGCAAGTAAGCAGGACACTTGACATTAAGAGATGGCATCTTTG
TCGTCCAGTCTTTCCGTTTTTTTTGGCCCAGGAAACTGGGAATTTATTAATTGTACATTG
CATATATGTTCTGAATTCTGACCCTCAAATAAAATAGAATAAGAGTAGCTTCCATTTTAT
AATTGATTGACTTAGCCTGTGTTAATATCGGCTCTGTTTTCATCCTGATGTGTATGCCTA
TTCATATAAAATGAGAGGAAGATTTTTTTTGTTTTTTGTTGCTAAGAGGTCTTTCTTTTT
AGGATATATACTGTGATGACTACAGAGTTCAAATTGAACCTTTAAAAAACCTGTGATTTG
TATATGAGGATATATCTGGTTTATATGCATCTCTTATTGAAGAAAGTGTCTCTTCTGTGG
TTCGCATACGTCCTGGTGTTCGCTGGTCGAATGGTTTACACTTGAAACTGACTGTGGCTT
ACTGTCGTTTCATAGATCTATGATCTCAACCGAAGCTAGCGTGAAAGTGCCATTTTTTAC
TTGATTCTCGTCTCTAATCTCCTACAGTTTTCCCTTACCAGTAACATGTTCAGAAATAGC
AAAGGTGTAATCTCTTATCAGAGGCAGAGCCACAGAACTTAAAGCTGAAGACGTTGGTTT
TCCAGGGTGTGGGTGATATTTAAAATTAGCATTTGACACTACTTCACAGCCTCTTTCAAA
AATAAATGTTTTCAGATTTTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTGCGAGGTGTCAGCAACCGGCTGTGATATTTATTGATGAAATTGATTCCCTATTAT
CTCAGCGGGGAGATGGGGAGCACGAATCTTCTAGAAGGATAAAAACCGAATTTCTGGTTC
AGCTGGATGGAGCAGCCACATCTTCGGAAGATCGCATCCTAGTGGTGGGAGCGACCAACC
GGCCACAGGAGATTGACGAGGCTGCCCGGAGAAGGTTGGTGAAAAGGCTTTACATTCCCC
TCCCGGAAGCGTCAGCCAGGAAGCAGATAGTAGTTAATCTGATGTCCAGGGAGCAGTGCT
GCCTCAGCGAGGAGGAAATCGACCTGGTCGTGGGGCGCTCAGATGGGTTCTCGGGCGCCG
ACATGACGCAGCTGTGCAGGGAGGCGTCGCTTGGCCCTATCCGCAGTTTACAGGCTGCAG
ACATTGCCACCATAACACCGGATCAGGTTCGACCGATAGCTTTCAGTGACTTTGAAAATG
CGTTTAGGACTGTGCGACCAAGTGTGTCTCCAGAAGATTTACAGCTTTATGAAAACTGGA
ACAGGACGTTTGGGTGTGGCAAGTAAGCAGGACACTTGACATTAAGAGATGGCATCTTTG
TCGTCCAGTCTTTCCGTTTTTTTTGGCCCAGGAAACTGGGAATTTATTAATTGTACATTG
CATATATGTTCTGAATTCTGACCCTCAAATAAAATAGAATAAGAGTAGCTTCCATTTTAT
AATTGATTGACTTAGCCTGTGTTAATATCGGCTCTGTTTTCATCCTGATGTGTATGCCTA
TTCATATAAAATGAGAGGAAGATTTTTTTTGTTTTTTGTTGCTAAGAGGTCTTTCTTTTT
AGGATATATACTGTGATGACTACAGAGTTCAAATTGAACCTTTAAAAAACCTGTGATTTG
TATATGAGGATATATCTGGTTTATATGCATCTCTTATTGAAGAAAGTGTCTCTTCTGTGG
TTCGCATACGTCCTGGTGTTCGCTGGTCGAATGGTTTACACTTGAAACTGACTGTGGCTT
ACTGTCGTTTCATAGATCTATGATCTCAACCGAAGCTAGCGTGAAAGTGCCATTTTTTAC
TTGATTCTCGTCTCTAATCTCCTACAGTTTTCCCTTACCAGTAACATGTTCAGAAATAGC
AAAGGTGTAATCTCTTATCAGAGGCAGAGCCACAGAACTTAAAGCTGAAGACGTTGGTTT
TCCAGGGTGTGGGTGATATTTAAAATTAGCATTTGACACTACTTCACAGCCTCTTTCAAA
AATAAATGTTTTCAGATTTTTCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10435339|dbj|BAB14567.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435339|dbj|BAB14567.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-985, gnl|bosTau2|chr4 (109613-108647)
               

               
               1-985, gnl|Hg17|chr7 (50287735-50286788)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-985, gnl|bosTau2|chr4 (109613-108647)
               

               
               1-985, gnl|Hg17|chr7 (50287735-50286788)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

	1-985, gnl\|bosTau2\|chr4 (109613-108647)
	1-985, gnl\|Hg17\|chr7 (50287735-50286788)

	tes (0.207814)
	hea (0.204499)
	nbm (0.198649)
	nmm (0.132802)
	med (0.116252)