Ss1.1-rhea32_p17.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GTTGACTCCAAGGGTTTTAATCAATACCATAACAAACCTTTTTCCTTTGATATGCTCAGA TTTTTGTTGTTTGGAGGGAGGAAGGGAGGGGAAGGGAGAGGGGAAGAGAGAGGTTTTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCACATGCGTGCGTG CACGCGTGCGAGTGTGTAGTATCCACCAGTATCAGTGCCTGCCTGAGTTAGGAAAATTAC ATTCCTGGTTCTGTGAGAGGAGAAGGGTGAATAAAGCATCATGAAACATTGGCCCTTATT TTGTTTTGAAGTATAGAGTAATGTTAATTGTTCTCAGAACTGGATTTTCTTCTTCAAAAT TAAAAGTTTTTTTTTTTTTTCTTTTGGATTCAATGAAGTACTGCTAGCTTAAGCCAGTTT GACATGGTAAGAGAGATGTCAGACTGATGAAAGGTGTGCAGCCTGATTTAAAACCAAACC CTGAGCCCTTTTAAAGAACAATAAAACATATTTTACATGCTCAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GTTGACTCCAAGGGTTTTAATCAATACCATAACAAACCTTTTTCCTTTGATATGCTCAGA TTTTTGTTGTTTGGAGGGAGGAAGGGAGGGGAAGGGAGAGGGGAAGAGAGAGGTTTTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCACATGCGTGCGTG CACGCGTGCGAGTGTGTAGTATCCACCAGTATCAGTGCCTGCCTGAGTTAGGAAAATTAC ATTCCTGGTTCTGTGAGAGGAGAAGGGTGAATAAAGCATCATGAAACATTGGCCCTTATT TTGTTTTGAAGTATAGAGTAATGTTAATTGTTCTCAGAACTGGATTTTCTTCTTCAAAAT TAAAAGTTTTTTTTTTTTTTCTTTTGGATTCAATGAAGTACTGCTAGCTTAAGCCAGTTT GACATGGTAAGAGAGATGTCAGACTGATGAAAGGTGTGCAGCCTGATTTAAAACCAAACC CTGAGCCCTTTTAAAGAACAATAAAACATATTTTACATGCTCAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
7-107, - strand, RNAz p=0.938546 | |
242-353, - strand, RNAz p=0.625218 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
7-107, - strand, RNAz p=0.938546 | |
242-353, - strand, RNAz p=0.625218 |
Aligned organism(s): 39 entry(ies) | More info |
Aligned organism(s): 39 entry(ies) | Help | Less info |
1-148, gnl|bosTau2|chr5 (17528889-17529041) | |
1-148, gnl|canFam2|chr2 (72130694-72130519) | |
1-148, gnl|canFam2|chr2 (72130577-72129867) | |
1-148, gnl|dasNov1|scaffold_23640 (42147-41962) | |
1-148, gnl|dasNov1|scaffold_23640 (42006-41306) | |
1-148, gnl|echTel1|scaffold_317975 (43937-43749) | |
1-148, gnl|echTel1|scaffold_317975 (43797-43094) | |
1-148, gnl|Hg17|chr1 (32041565-32041425) | |
1-148, gnl|hg17|chr11 (133496915-133497638) | |
1-148, gnl|hg17|chr16 (11952845-11953053) | |
1-148, gnl|loxAfr1|scaffold_47747 (1372-1551) | |
1-148, gnl|loxAfr1|scaffold_47747 (1507-2209) | |
1-148, gnl|mm7|chr4 (4502563-4502738) | |
1-148, gnl|mm7|chr4 (129294325-129293711) | |
1-148, gnl|monDom2|scaffold_43 (7918759-7918612) | |
1-148, gnl|monDom2|scaffold_43 (7918646-7917963) | |
1-148, gnl|oryCun1|scaffold_194005 (12833-12653) | |
1-148, gnl|oryCun1|scaffold_194005 (12715-11999) | |
1-148, gnl|panTro1|chr18 (12281067-12281261) | |
1-148, gnl|panTro1|chr9 (135732285-135733012) | |
1-148, gnl|rheMac2|chr14 (132126968-132127682) | |
1-148, gnl|rheMac2|chr20 (12027570-12027736) | |
1-148, gnl|rn3|chr16 (61284081-61284245) | |
1-148, gnl|rn3|chr16 (61284193-61284865) | |
171-522, gnl|bosTau2|chr5 (17529018-17529358) | |
171-522, gnl|canFam2|chr2 (72130897-72130578) | |
171-522, gnl|dasNov1|scaffold_23640 (42331-42007) | |
171-522, gnl|echTel1|scaffold_317975 (44126-43798) | |
171-522, gnl|galGal2|chr23 (4504677-4504947) | |
171-522, gnl|Hg17|chr1 (32041448-32041115) | |
171-522, gnl|hg17|chr11 (133496589-133496914) | |
171-522, gnl|loxAfr1|scaffold_47747 (1188-1506) | |
171-522, gnl|mm7|chr4 (129294627-129294326) | |
171-522, gnl|Mm7|chr4 (129294280-129294627) | |
171-522, gnl|monDom2|scaffold_43 (7918978-7918647) | |
171-522, gnl|oryCun1|scaffold_194005 (13038-12716) | |
171-522, gnl|panTro1|chr9 (135731953-135732284) | |
171-522, gnl|rheMac2|chr14 (132126653-132126967) | |
171-522, gnl|rn3|chr16 (61283881-61284192) |
Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-148, gnl|bosTau2|chr5 (17528889-17529041) | |
1-148, gnl|canFam2|chr2 (72130694-72130519) | |
1-148, gnl|canFam2|chr2 (72130577-72129867) | |
1-148, gnl|dasNov1|scaffold_23640 (42147-41962) | |
1-148, gnl|dasNov1|scaffold_23640 (42006-41306) | |
1-148, gnl|echTel1|scaffold_317975 (43937-43749) | |
1-148, gnl|echTel1|scaffold_317975 (43797-43094) | |
1-148, gnl|Hg17|chr1 (32041565-32041425) | |
1-148, gnl|hg17|chr11 (133496915-133497638) | |
1-148, gnl|hg17|chr16 (11952845-11953053) | |
1-148, gnl|loxAfr1|scaffold_47747 (1372-1551) | |
1-148, gnl|loxAfr1|scaffold_47747 (1507-2209) | |
1-148, gnl|mm7|chr4 (4502563-4502738) | |
1-148, gnl|mm7|chr4 (129294325-129293711) | |
1-148, gnl|monDom2|scaffold_43 (7918759-7918612) | |
1-148, gnl|monDom2|scaffold_43 (7918646-7917963) | |
1-148, gnl|oryCun1|scaffold_194005 (12833-12653) | |
1-148, gnl|oryCun1|scaffold_194005 (12715-11999) | |
1-148, gnl|panTro1|chr18 (12281067-12281261) | |
1-148, gnl|panTro1|chr9 (135732285-135733012) | |
1-148, gnl|rheMac2|chr14 (132126968-132127682) | |
1-148, gnl|rheMac2|chr20 (12027570-12027736) | |
1-148, gnl|rn3|chr16 (61284081-61284245) | |
1-148, gnl|rn3|chr16 (61284193-61284865) | |
171-522, gnl|bosTau2|chr5 (17529018-17529358) | |
171-522, gnl|canFam2|chr2 (72130897-72130578) | |
171-522, gnl|dasNov1|scaffold_23640 (42331-42007) | |
171-522, gnl|echTel1|scaffold_317975 (44126-43798) | |
171-522, gnl|galGal2|chr23 (4504677-4504947) | |
171-522, gnl|Hg17|chr1 (32041448-32041115) | |
171-522, gnl|hg17|chr11 (133496589-133496914) | |
171-522, gnl|loxAfr1|scaffold_47747 (1188-1506) | |
171-522, gnl|mm7|chr4 (129294627-129294326) | |
171-522, gnl|Mm7|chr4 (129294280-129294627) | |
171-522, gnl|monDom2|scaffold_43 (7918978-7918647) | |
171-522, gnl|oryCun1|scaffold_194005 (13038-12716) | |
171-522, gnl|panTro1|chr9 (135731953-135732284) | |
171-522, gnl|rheMac2|chr14 (132126653-132126967) | |
171-522, gnl|rn3|chr16 (61283881-61284192) |
Expressed library(ies): 13 entry(ies) | More info |
Expressed library(ies): 13 entry(ies) | Help | Less info |
sto (0.359648) | |
fbs (0.350693) | |
spc (0.340097) | |
hea (0.204499) | |
nbm (0.198649) | |
aor (0.195274) | |
cmu (0.186393) | |
eye (0.170503) | |
fhi (0.169578) | |
isp (0.150376) | |
lnt (0.142308) | |
nca (0.136874) | |
che (0.136314) |
Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
sto (0.359648) | |
fbs (0.350693) | |
spc (0.340097) | |
hea (0.204499) | |
nbm (0.198649) | |
aor (0.195274) | |
cmu (0.186393) | |
eye (0.170503) | |
fhi (0.169578) | |
isp (0.150376) | |
lnt (0.142308) | |
nca (0.136874) | |
che (0.136314) |