Non-Coding RNA Search

Ss1.1-rhea34_k9.5

Sequence:


               
               CTTTTGTGCGGGGCTGCGGGCGGCGGGTCGCGGGTCGCGGGTCGGGTGGGGGCGGCGGCC
GACCAGGGCGAGGCGCCTGCCCCGCGGGGACGCCCAGCGCAGCCCAGTCCCGCTCCGCCG
GGCCCGGCCCTGCCCTGCGGCTGGGCGCCCGCCGCGCCGCATCCATGTTCGACACCACTC
CCCACTCCGGCCGGAGCACGCCAAGCAGCTCCCCGTCTCTCCGTAAGCGGCTCCAGCTCT
TGCCCCCAAGCCGACCCCCGCCTGAGCCAGAACCAAGCACCATGGTGGAGAAGGGGTCAG
ACAGCTCCTCAGAGAAGGGCGGGGTGCCCGGGACGCCCAGCACCCAGAGCCTGGGCAGCC
CGAATTTCATCCGCAACAGCAAGAAGATGCAGAGCTGGTACAATATGCTGAGCCCCACAT
ACAAACAGCGGAACGAGGACTTCCGGAAACTGTTCAGCAAACTCCCTGAGGCCGAACGCC
TCATTGTGGATTACTCCTGTGCCTTGCAGCGCGAGATCCTCCTCCAGGGCCGCCTCTATC
TCTCCGAGAACTGGATCTGCTTCTACAGCAACATCTTCCATCCAGTTGAAGGAAGTGACG
TGTCTGAAGAAGGAAAAGACGGCCAAGCTGATCCCCAACGCCATCCAGATCTGCACAGAG
AGCGAGAAGCACTTCTTCACCTCCTTCGGGGCCCGAGACCGCTGCTTCCTCCTCATCTTC
CGCCTCTGGCAGAACGCGCTACTTGAAAAGTCCCATCAGCACTGTCTCATGGAACTTTGT
GCCGTGATGGAAGGGTGCTCCTGGTGCCTGCTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGTGCGGGGCTGCGGGCGGCGGGTCGCGGGTCGCGGGTCGGGTGGGGGCGGCGGCC
GACCAGGGCGAGGCGCCTGCCCCGCGGGGACGCCCAGCGCAGCCCAGTCCCGCTCCGCCG
GGCCCGGCCCTGCCCTGCGGCTGGGCGCCCGCCGCGCCGCATCCATGTTCGACACCACTC
CCCACTCCGGCCGGAGCACGCCAAGCAGCTCCCCGTCTCTCCGTAAGCGGCTCCAGCTCT
TGCCCCCAAGCCGACCCCCGCCTGAGCCAGAACCAAGCACCATGGTGGAGAAGGGGTCAG
ACAGCTCCTCAGAGAAGGGCGGGGTGCCCGGGACGCCCAGCACCCAGAGCCTGGGCAGCC
CGAATTTCATCCGCAACAGCAAGAAGATGCAGAGCTGGTACAATATGCTGAGCCCCACAT
ACAAACAGCGGAACGAGGACTTCCGGAAACTGTTCAGCAAACTCCCTGAGGCCGAACGCC
TCATTGTGGATTACTCCTGTGCCTTGCAGCGCGAGATCCTCCTCCAGGGCCGCCTCTATC
TCTCCGAGAACTGGATCTGCTTCTACAGCAACATCTTCCATCCAGTTGAAGGAAGTGACG
TGTCTGAAGAAGGAAAAGACGGCCAAGCTGATCCCCAACGCCATCCAGATCTGCACAGAG
AGCGAGAAGCACTTCTTCACCTCCTTCGGGGCCCGAGACCGCTGCTTCCTCCTCATCTTC
CGCCTCTGGCAGAACGCGCTACTTGAAAAGTCCCATCAGCACTGTCTCATGGAACTTTGT
GCCGTGATGGAAGGGTGCTCCTGGTGCCTGCTGAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61833447|ref|XP_583571.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61833447|ref|XP_583571.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               278-383, - strand, RNAz p=0.654261

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-383, - strand, RNAz p=0.654261

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               173-383, gnl|bosTau2|chr18 (40020556-40020346)
               

               
               173-383, gnl|canFam2|chr1 (120436966-120436805)
               

               
               173-383, gnl|danRer3|chr10 (37250373-37250525)
               

               
               173-383, gnl|echTel1|scaffold_199615 (83-244)
               

               
               173-383, gnl|fr1|chrUn (163110415-163110266)
               

               
               173-383, gnl|hg17|chr19 (40191845-40192008)
               

               
               173-383, gnl|Hg17|chr19 (40191863-40192073)
               

               
               173-383, gnl|loxAfr1|scaffold_141020 (136-297)
               

               
               173-383, gnl|mm7|chr7 (28086829-28086662)
               

               
               173-383, gnl|Mm7|chr7 (28086811-28086595)
               

               
               173-383, gnl|monDom2|scaffold_139 (1336575-1336751)
               

               
               173-383, gnl|oryCun1|scaffold_134819 (4814-4977)
               

               
               173-383, gnl|panTro1|chr20 (36776781-36776944)
               

               
               173-383, gnl|rheMac2|chr19 (41499616-41499779)
               

               
               173-383, gnl|rn3|chr1 (86267730-86267563)
               

               
               173-383, gnl|tetNig1|chrUn_random (13664254-13664108)
               

               
               173-383, gnl|xenTro1|scaffold_733 (192080-191946)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-383, gnl|bosTau2|chr18 (40020556-40020346)
               

               
               173-383, gnl|canFam2|chr1 (120436966-120436805)
               

               
               173-383, gnl|danRer3|chr10 (37250373-37250525)
               

               
               173-383, gnl|echTel1|scaffold_199615 (83-244)
               

               
               173-383, gnl|fr1|chrUn (163110415-163110266)
               

               
               173-383, gnl|hg17|chr19 (40191845-40192008)
               

               
               173-383, gnl|Hg17|chr19 (40191863-40192073)
               

               
               173-383, gnl|loxAfr1|scaffold_141020 (136-297)
               

               
               173-383, gnl|mm7|chr7 (28086829-28086662)
               

               
               173-383, gnl|Mm7|chr7 (28086811-28086595)
               

               
               173-383, gnl|monDom2|scaffold_139 (1336575-1336751)
               

               
               173-383, gnl|oryCun1|scaffold_134819 (4814-4977)
               

               
               173-383, gnl|panTro1|chr20 (36776781-36776944)
               

               
               173-383, gnl|rheMac2|chr19 (41499616-41499779)
               

               
               173-383, gnl|rn3|chr1 (86267730-86267563)
               

               
               173-383, gnl|tetNig1|chrUn_random (13664254-13664108)
               

               
               173-383, gnl|xenTro1|scaffold_733 (192080-191946)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hea (0.204499)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	173-383, gnl\|bosTau2\|chr18 (40020556-40020346)
	173-383, gnl\|canFam2\|chr1 (120436966-120436805)
	173-383, gnl\|danRer3\|chr10 (37250373-37250525)
	173-383, gnl\|echTel1\|scaffold_199615 (83-244)
	173-383, gnl\|fr1\|chrUn (163110415-163110266)
	173-383, gnl\|hg17\|chr19 (40191845-40192008)
	173-383, gnl\|Hg17\|chr19 (40191863-40192073)
	173-383, gnl\|loxAfr1\|scaffold_141020 (136-297)
	173-383, gnl\|mm7\|chr7 (28086829-28086662)
	173-383, gnl\|Mm7\|chr7 (28086811-28086595)
	173-383, gnl\|monDom2\|scaffold_139 (1336575-1336751)
	173-383, gnl\|oryCun1\|scaffold_134819 (4814-4977)
	173-383, gnl\|panTro1\|chr20 (36776781-36776944)
	173-383, gnl\|rheMac2\|chr19 (41499616-41499779)
	173-383, gnl\|rn3\|chr1 (86267730-86267563)
	173-383, gnl\|tetNig1\|chrUn_random (13664254-13664108)
	173-383, gnl\|xenTro1\|scaffold_733 (192080-191946)