Non-Coding RNA Search

Ss1.1-rhea39_i3.5

Sequence:


               
               ACTGTCAGAAATTGTTCACTGGATGTATTTTTCTATTTCTTTTATGTTGCTTCACCTTTT
AAGTTACCTTGGTAAAAGTTTGGCTGCCTTCTCATGTTTTTAAAATGAATGCAATGAATA
GCAGTCTTTTTATTTCAACCTTTTAAACACTTTGTAAAGGAAAGAAGTAATGCAAAGAAC
AAAATCCCATTCGGAAACTGATTGTCAGTTTGGCCGCTGTGGCAGCAGCAAGTCACATAA
CCTCATTTAGTTTCTTCATCTACAAAATGTGGAGAATAACCTACCTCACAGATGTGTGTG
GGAAACTGTTTAAAGGCCCTTGTTTAAATACAAGATTTATCATATTTAATGTAAATCCCT
TCCTTTTTTTATAGATATCTTTGCTACTGATAGGATGAGTATCTTGATTTTAGGTAAGTC
GTACGTGCTAAGAATGTAGCAGTAAAAATGTTTTAAGATGACAATTTCACAAATTATGGT
GTTCTCATTTTTAAGTGACTTTTAAAATTTCTTGCAAATATCAAATATCCAAATATCACA
TATTCACAATTTCTTAAAATGTTGGCTGGAGCTGCCTTAATATACCAAAATACGGCTTTC
CCTCAAAACTGTTCACAAATATCTATGGTTGTACGATGTTTTGAATGTTTAATGTAAAAT
TGTTGTAGAACTATGAACTCTACACATAGTAATCTTGTTTTAGGAAGAATGCTTGTGTTC
AGTATCATGTATGCTTAAGTATCATACAGTGACTTTTGAGTGCAGCAAACAAAACTGAAA
GTTGACAGCCATTTGGTTGTGTCCATGACAATCATAAGAAAATATAAGATTGGATATTAA
TCAAAAAATTTTCAAGAACATTTTGCATTCATTTTTTCTTAGCCCATCTTTGAAGACAAA
ATCCCAGAGACTGATAGATTTACCCATTGAAGCACTTGATTACATATCTGTTAAAGTAGT
TTTTTTAAACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTCAGAAATTGTTCACTGGATGTATTTTTCTATTTCTTTTATGTTGCTTCACCTTTT
AAGTTACCTTGGTAAAAGTTTGGCTGCCTTCTCATGTTTTTAAAATGAATGCAATGAATA
GCAGTCTTTTTATTTCAACCTTTTAAACACTTTGTAAAGGAAAGAAGTAATGCAAAGAAC
AAAATCCCATTCGGAAACTGATTGTCAGTTTGGCCGCTGTGGCAGCAGCAAGTCACATAA
CCTCATTTAGTTTCTTCATCTACAAAATGTGGAGAATAACCTACCTCACAGATGTGTGTG
GGAAACTGTTTAAAGGCCCTTGTTTAAATACAAGATTTATCATATTTAATGTAAATCCCT
TCCTTTTTTTATAGATATCTTTGCTACTGATAGGATGAGTATCTTGATTTTAGGTAAGTC
GTACGTGCTAAGAATGTAGCAGTAAAAATGTTTTAAGATGACAATTTCACAAATTATGGT
GTTCTCATTTTTAAGTGACTTTTAAAATTTCTTGCAAATATCAAATATCCAAATATCACA
TATTCACAATTTCTTAAAATGTTGGCTGGAGCTGCCTTAATATACCAAAATACGGCTTTC
CCTCAAAACTGTTCACAAATATCTATGGTTGTACGATGTTTTGAATGTTTAATGTAAAAT
TGTTGTAGAACTATGAACTCTACACATAGTAATCTTGTTTTAGGAAGAATGCTTGTGTTC
AGTATCATGTATGCTTAAGTATCATACAGTGACTTTTGAGTGCAGCAAACAAAACTGAAA
GTTGACAGCCATTTGGTTGTGTCCATGACAATCATAAGAAAATATAAGATTGGATATTAA
TCAAAAAATTTTCAAGAACATTTTGCATTCATTTTTTCTTAGCCCATCTTTGAAGACAAA
ATCCCAGAGACTGATAGATTTACCCATTGAAGCACTTGATTACATATCTGTTAAAGTAGT
TTTTTTAAACCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               187-306, - strand, RNAz p=0.663077

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-306, - strand, RNAz p=0.663077

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-864, gnl|bosTau2|chr3 (57863701-57862818)
               

               
               1-864, gnl|Hg17|chr1 (56891738-56892599)
               

               
               1-864, gnl|Mm7|chr4 (104406866-104406022)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr3 (57863701-57862818)
               

               
               1-864, gnl|Hg17|chr1 (56891738-56892599)
               

               
               1-864, gnl|Mm7|chr4 (104406866-104406022)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ste (0.270416)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.270416)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)

	1-864, gnl\|bosTau2\|chr3 (57863701-57862818)
	1-864, gnl\|Hg17\|chr1 (56891738-56892599)
	1-864, gnl\|Mm7\|chr4 (104406866-104406022)

	ste (0.270416)
	hea (0.204499)
	fbs (0.175346)
	tbr (0.154178)
	bfe (0.149858)
	liv (0.146284)
	ssp (0.13552)