Non-Coding RNA Search

Ss1.1-rhea39_j15.5

Sequence:


               
               ATAGCATGGATATCATCGATTATGCTGGCTGTTATGTACGCAGGAGGTCCCATAAGTAGT
GTTTTGGTGAATAAATATGGTAGCCGGCCAGTGGTGATGGTAGGAGGTTTATTATGCTGT
TTGGGAATGGTCACAGCTTCCTTTAGTACCAGCGTACTAGAGCTTTACCTCACTATGGGA
TTCATTTGCGGTACCTTGGTGGAGAAAACCGGACAATATAAATACATGTATCTGGCCTGT
GGAGCTATTGTGGTCATATCCAGTGTGTGGCTACTCATTGGCAATGCTATCAACTACAGA
CTGCTTGCAAAGGAAAAGAAGAAAGAGGCAAAGAAGACTAGACATAAGCCTGAGTCCCAA
GAATCTGAATCCTTGAAGACAGCTAAAAGTCATGATGTTAGTGTCAAAAGTTTCAAAAGT
CTCAAAAGTATGAAAAGTCATAAGTCAAAAGGATCAGAGTTTAATCCCTCAGAAAGAGAA
ACTAATATTTAACAAGAACTACATCTCTGATTTCAGTGTGTATGACTTTCCTAGGAGTAT
TTTTTTTCCAACACATTGGAAGGCTTTTAGTTGAAATGAAGAGTTATAATAAAGGATGGA
GATGAGATTTTCCTTAATGGCAAATTTTATATAAGTTTGTTTTTGAAAACTTATTTGAGC
AGTTAAAATTTGAGATCATGCATATAAAGAATGCATGCAAGGTGTTTGTTTCCATACATG
ACTCTGGTGAAGTCTTCCAATCTTGGTTTTAGAGATCTGAATCCTAAACCCCTGGTTTAA
GTGCTCAGGAGTATATTTAATGCTGCAAGAATACCCTCTCCACATCTCATTTTTTATTCA
ATATTGAAATATGAAATGGAATTGGAGGAAATGAATTGTTCCTAAACAGACTTACACACA
CCAGCTTTTACACACTTAGGAACAAGGAAACACAGTGTGTGGAGAAAAAAGACAAGTTCA
AAAAGAATATTATCACTGTAATTTTTTTTTTTTACTTAAAAAAAAAATCCATGGAGAGTA
AAGAAATGTGGTATATAAACCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGCATGGATATCATCGATTATGCTGGCTGTTATGTACGCAGGAGGTCCCATAAGTAGT
GTTTTGGTGAATAAATATGGTAGCCGGCCAGTGGTGATGGTAGGAGGTTTATTATGCTGT
TTGGGAATGGTCACAGCTTCCTTTAGTACCAGCGTACTAGAGCTTTACCTCACTATGGGA
TTCATTTGCGGTACCTTGGTGGAGAAAACCGGACAATATAAATACATGTATCTGGCCTGT
GGAGCTATTGTGGTCATATCCAGTGTGTGGCTACTCATTGGCAATGCTATCAACTACAGA
CTGCTTGCAAAGGAAAAGAAGAAAGAGGCAAAGAAGACTAGACATAAGCCTGAGTCCCAA
GAATCTGAATCCTTGAAGACAGCTAAAAGTCATGATGTTAGTGTCAAAAGTTTCAAAAGT
CTCAAAAGTATGAAAAGTCATAAGTCAAAAGGATCAGAGTTTAATCCCTCAGAAAGAGAA
ACTAATATTTAACAAGAACTACATCTCTGATTTCAGTGTGTATGACTTTCCTAGGAGTAT
TTTTTTTCCAACACATTGGAAGGCTTTTAGTTGAAATGAAGAGTTATAATAAAGGATGGA
GATGAGATTTTCCTTAATGGCAAATTTTATATAAGTTTGTTTTTGAAAACTTATTTGAGC
AGTTAAAATTTGAGATCATGCATATAAAGAATGCATGCAAGGTGTTTGTTTCCATACATG
ACTCTGGTGAAGTCTTCCAATCTTGGTTTTAGAGATCTGAATCCTAAACCCCTGGTTTAA
GTGCTCAGGAGTATATTTAATGCTGCAAGAATACCCTCTCCACATCTCATTTTTTATTCA
ATATTGAAATATGAAATGGAATTGGAGGAAATGAATTGTTCCTAAACAGACTTACACACA
CCAGCTTTTACACACTTAGGAACAAGGAAACACAGTGTGTGGAGAAAAAAGACAAGTTCA
AAAAGAATATTATCACTGTAATTTTTTTTTTTTACTTAAAAAAAAAATCCATGGAGAGTA
AAGAAATGTGGTATATAAACCTGC

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               45-193, gnl|bosTau2|chr24 (33629518-33629666)
               

               
               45-193, gnl|canFam2|chr10 (6473480-6473667)
               

               
               45-193, gnl|danRer3|chr4 (101296-101123)
               

               
               45-193, gnl|dasNov1|scaffold_2055 (55934-56121)
               

               
               45-193, gnl|echTel1|scaffold_286248 (40079-40265)
               

               
               45-193, gnl|fr1|chrUn (298260606-298260438)
               

               
               45-193, gnl|galGal2|chr12 (14646557-14646725)
               

               
               45-193, gnl|hg17|chr12 (58451231-58451418)
               

               
               45-193, gnl|Hg17|chr12 (58451265-58451413)
               

               
               45-193, gnl|loxAfr1|scaffold_741 (54974-55165)
               

               
               45-193, gnl|mm7|chr10 (124726861-124726674)
               

               
               45-193, gnl|Mm7|chr10 (124726825-124726677)
               

               
               45-193, gnl|monDom2|scaffold_71 (492681-492858)
               

               
               45-193, gnl|oryCun1|scaffold_206464 (46485-46672)
               

               
               45-193, gnl|panTro1|chr10 (59721047-59721234)
               

               
               45-193, gnl|rheMac2|chr11 (56909149-56909336)
               

               
               45-193, gnl|rn3|chr7 (65237651-65237464)
               

               
               45-193, gnl|tetNig1|chrUn_random (55048846-55049015)
               

               
               45-193, gnl|xenTro1|scaffold_724 (473632-473447)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-193, gnl|bosTau2|chr24 (33629518-33629666)
               

               
               45-193, gnl|canFam2|chr10 (6473480-6473667)
               

               
               45-193, gnl|danRer3|chr4 (101296-101123)
               

               
               45-193, gnl|dasNov1|scaffold_2055 (55934-56121)
               

               
               45-193, gnl|echTel1|scaffold_286248 (40079-40265)
               

               
               45-193, gnl|fr1|chrUn (298260606-298260438)
               

               
               45-193, gnl|galGal2|chr12 (14646557-14646725)
               

               
               45-193, gnl|hg17|chr12 (58451231-58451418)
               

               
               45-193, gnl|Hg17|chr12 (58451265-58451413)
               

               
               45-193, gnl|loxAfr1|scaffold_741 (54974-55165)
               

               
               45-193, gnl|mm7|chr10 (124726861-124726674)
               

               
               45-193, gnl|Mm7|chr10 (124726825-124726677)
               

               
               45-193, gnl|monDom2|scaffold_71 (492681-492858)
               

               
               45-193, gnl|oryCun1|scaffold_206464 (46485-46672)
               

               
               45-193, gnl|panTro1|chr10 (59721047-59721234)
               

               
               45-193, gnl|rheMac2|chr11 (56909149-56909336)
               

               
               45-193, gnl|rn3|chr7 (65237651-65237464)
               

               
               45-193, gnl|tetNig1|chrUn_random (55048846-55049015)
               

               
               45-193, gnl|xenTro1|scaffold_724 (473632-473447)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               isp (0.150376)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               isp (0.150376)

	45-193, gnl\|bosTau2\|chr24 (33629518-33629666)
	45-193, gnl\|canFam2\|chr10 (6473480-6473667)
	45-193, gnl\|danRer3\|chr4 (101296-101123)
	45-193, gnl\|dasNov1\|scaffold_2055 (55934-56121)
	45-193, gnl\|echTel1\|scaffold_286248 (40079-40265)
	45-193, gnl\|fr1\|chrUn (298260606-298260438)
	45-193, gnl\|galGal2\|chr12 (14646557-14646725)
	45-193, gnl\|hg17\|chr12 (58451231-58451418)
	45-193, gnl\|Hg17\|chr12 (58451265-58451413)
	45-193, gnl\|loxAfr1\|scaffold_741 (54974-55165)
	45-193, gnl\|mm7\|chr10 (124726861-124726674)
	45-193, gnl\|Mm7\|chr10 (124726825-124726677)
	45-193, gnl\|monDom2\|scaffold_71 (492681-492858)
	45-193, gnl\|oryCun1\|scaffold_206464 (46485-46672)
	45-193, gnl\|panTro1\|chr10 (59721047-59721234)
	45-193, gnl\|rheMac2\|chr11 (56909149-56909336)
	45-193, gnl\|rn3\|chr7 (65237651-65237464)
	45-193, gnl\|tetNig1\|chrUn_random (55048846-55049015)
	45-193, gnl\|xenTro1\|scaffold_724 (473632-473447)