Non-Coding RNA Search

Ss1.1-rhea39_p11.5

Sequence:


               
               GCAGTTCGGAGGAACCTGTGTCCCCAGCTTAGCAACCCTGGGGTTCATCTGCTCAAACCA
GATGACTTCTGAGCTTCCTCCATCTGCGCCCAGCCTCAGGGCCTAGGAGATGTGACCCGT
AAGAAAATGCCATTGCTCCTCTTTCAGTTGGGAACTCTTAGAAGTGATGCTGAATGCCAG
ACGCCACTGCAACGTGGAATCCAGCAGCCCAGCCAAGCTGCGCGTTACTCTCCTTTACGT
CCTCACACTCAGGACTGGCTTTGTGAGGAAGCGCCCTTGGGATTCCAGAGCTTTCTGTTA
CAAATGGCCACACTTGCGAGTTCATTGTCTGCATGCACTGTTCCTCACAGGAGCTAGCTC
TTAATTCGTATTTATTTTGGGTTCATTTAAAGTGTCAACTTAGTGTCCTAATATATTTAC
TTTTGGAAAGGACCAACTTGCCATACATCTTATTTTTGAGCCTGCATTGTTGATACCTCG
TGCAGTGACCAGCAAGTAACTATATACCCGCGTGTTCGATACTGATTACATCATTTGCAT
CACGTTCAGTATTTGAAATTAAAGATGTGAGTGTTCTGTGACCAGACGGGTTTGACACGG
ATAGAACCAGCTCCCAGTGGTGTAAGAATCCTGAAAAATCTGGTCACCTGCTCCACTGCA
TCTGGATTGAGTGTATTTTAACAGAGAAAGAAATTAAACAATTTTCTATTAAGAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTTCGGAGGAACCTGTGTCCCCAGCTTAGCAACCCTGGGGTTCATCTGCTCAAACCA
GATGACTTCTGAGCTTCCTCCATCTGCGCCCAGCCTCAGGGCCTAGGAGATGTGACCCGT
AAGAAAATGCCATTGCTCCTCTTTCAGTTGGGAACTCTTAGAAGTGATGCTGAATGCCAG
ACGCCACTGCAACGTGGAATCCAGCAGCCCAGCCAAGCTGCGCGTTACTCTCCTTTACGT
CCTCACACTCAGGACTGGCTTTGTGAGGAAGCGCCCTTGGGATTCCAGAGCTTTCTGTTA
CAAATGGCCACACTTGCGAGTTCATTGTCTGCATGCACTGTTCCTCACAGGAGCTAGCTC
TTAATTCGTATTTATTTTGGGTTCATTTAAAGTGTCAACTTAGTGTCCTAATATATTTAC
TTTTGGAAAGGACCAACTTGCCATACATCTTATTTTTGAGCCTGCATTGTTGATACCTCG
TGCAGTGACCAGCAAGTAACTATATACCCGCGTGTTCGATACTGATTACATCATTTGCAT
CACGTTCAGTATTTGAAATTAAAGATGTGAGTGTTCTGTGACCAGACGGGTTTGACACGG
ATAGAACCAGCTCCCAGTGGTGTAAGAATCCTGAAAAATCTGGTCACCTGCTCCACTGCA
TCTGGATTGAGTGTATTTTAACAGAGAAAGAAATTAAACAATTTTCTATTAAGAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               555-671, - strand, RNAz p=0.736464

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               555-671, - strand, RNAz p=0.736464

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-717, gnl|bosTau2|chr7 (37309337-37308629)
               

               
               2-717, gnl|Hg17|chr5 (138774827-138773791)
               

               
               2-717, gnl|Mm7|chr18 (36047848-36047202)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-717, gnl|bosTau2|chr7 (37309337-37308629)
               

               
               2-717, gnl|Hg17|chr5 (138774827-138773791)
               

               
               2-717, gnl|Mm7|chr18 (36047848-36047202)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               isp (0.300752)
               

               
               eru (0.240096)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               isp (0.300752)
               

               
               eru (0.240096)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	2-717, gnl\|bosTau2\|chr7 (37309337-37308629)
	2-717, gnl\|Hg17\|chr5 (138774827-138773791)
	2-717, gnl\|Mm7\|chr18 (36047848-36047202)

	cbe (0.478469)
	hea (0.408998)
	isp (0.300752)
	eru (0.240096)
	cmu (0.186393)
	fbs (0.175346)
	hyp (0.142837)
	che (0.136314)
	ssp (0.13552)
	sug (0.127291)
	clu (0.119646)
	jca (0.11396)
	ldo (0.0970026)