Non-Coding RNA Search

Ss1.1-rhea40_c3.5

Sequence:


               
               GACCCGAGGGAGCTCGCGGAGGGCACTGGCGTCTAAACCAGGGAACCACGGAACTAAAGC
CCAATTTGCTTGCATTTTCTGGTGACTTTTATAACTTTCAGATACTCGGACTTGTGGGAT
TTTATAATTTCATATCAGCTGATGAGGTATGCTTGCTTTTATATCCTGGACGTCTCCTCA
AAGAGGGGACAGGCCTGGTTTCCTTTGTACTAATCGGGAAGGCTGTGAGATTAATCCAGA
GCATTAATTGTATCACTGTGTATTGTAACAGATTCTTTTCAGCTTTTGGTGCTGGCTTCA
GAGTGGAGCCAGCCACGTTTCACCGTATATCAAGCATTATAGAGAAAGACAGACATTTTC
TTCTTTGTGTAGCTCTCCTAACACACTCTTTATTTTACTACAGAAATTATTTTAGAGTTT
TTGTATAGACTTCTTTAGTAGTCTGTTTCTAAAATGAAATGTATTTCAATAAGCGGTGTA
ATTTTTTCAGTGTAGCTGGACCTATGTTGTAAAATAGAAAAAAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCGAGGGAGCTCGCGGAGGGCACTGGCGTCTAAACCAGGGAACCACGGAACTAAAGC
CCAATTTGCTTGCATTTTCTGGTGACTTTTATAACTTTCAGATACTCGGACTTGTGGGAT
TTTATAATTTCATATCAGCTGATGAGGTATGCTTGCTTTTATATCCTGGACGTCTCCTCA
AAGAGGGGACAGGCCTGGTTTCCTTTGTACTAATCGGGAAGGCTGTGAGATTAATCCAGA
GCATTAATTGTATCACTGTGTATTGTAACAGATTCTTTTCAGCTTTTGGTGCTGGCTTCA
GAGTGGAGCCAGCCACGTTTCACCGTATATCAAGCATTATAGAGAAAGACAGACATTTTC
TTCTTTGTGTAGCTCTCCTAACACACTCTTTATTTTACTACAGAAATTATTTTAGAGTTT
TTGTATAGACTTCTTTAGTAGTCTGTTTCTAAAATGAAATGTATTTCAATAAGCGGTGTA
ATTTTTTCAGTGTAGCTGGACCTATGTTGTAAAATAGAAAAAAAATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-487, + strand, RNAz p=0.922529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-487, + strand, RNAz p=0.922529

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               370-497, + strand, RNAmicro p=0.998725

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               370-497, + strand, RNAmicro p=0.998725

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014897, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014897, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-528, gnl|bosTau2|chr19 (30074278-30074796)
               

               
               10-528, gnl|Hg17|chr17 (44730603-44730084)
               

               
               10-528, gnl|Mm7|chr11 (95873245-95873741)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-528, gnl|bosTau2|chr19 (30074278-30074796)
               

               
               10-528, gnl|Hg17|chr17 (44730603-44730084)
               

               
               10-528, gnl|Mm7|chr11 (95873245-95873741)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               cut (0.169924)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               cut (0.169924)
               

               
               ova (0.129132)

	10-528, gnl\|bosTau2\|chr19 (30074278-30074796)
	10-528, gnl\|Hg17\|chr17 (44730603-44730084)
	10-528, gnl\|Mm7\|chr11 (95873245-95873741)