Non-Coding RNA Search

Ss1.1-rhea40_e12.5

Sequence:


               
               CTGGAATGGAAGCCTAAAAGCCCTTCGTGAAACAAAATGTTCCCGACAGGAAGTCATCTC
CTACTATTCCCAGTATTCTCTGGATGAAAAGATGCGCAGCCACATGGCCCTGGACTGGAT
CATGAAGGAGCGGGAGTCGCCAGGAATTCTCTCCCAAGAGCTACGAATGGCCCTGAGGGA
ATTGGAGGAAGCCAGGAAAGCAGGACAAGAACTACGGTTTTACAAAGAAAAGAAAGAAAT
CCTGAGTTTAGCTTTGACTCAGATCTACAGTGATCCTGACACTTCCTCACCCAGTGATGA
TCAGCTGAGCCTTACGGCCCTTTGTGGCTATCACTAGCAAGGCCAGGTCCCAGCTGCCCC
CTTGGGGGCAGAAGCCAGACTCTAACATTAGGAAGGTCATTGAAGGAGGTCATCAGAGGC
TTTAGCACCTATAGCTGCTACCTGAAAGCTGTACTAATTCTCCCTGCCCACCTACTCCAT
TCACAGAATCTCAGAGTAATAGGACCCTTACAGGAGACTTCATCCCATTCAATGCAGTTT
TCCCATAACACCCTCAGTAGTTCCACCCCAGACTGAATGGATAGAGACAGGATTGTTTGA
AAAATATTTTCCAGGACTGCCTTTAACTTTAAGGCTGGTTGACATGGGCCTTGCTAGATT
ATATACATTGTTTCAAAGAATGGGTCAATGTAGTCTTTCCCCAAAAGAACATCAGCCAGG
ACTGGGGAAAGTAGCACCACAGCAATTTTTTAAAAATTCTTGAGATTAAATAACCAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAATGGAAGCCTAAAAGCCCTTCGTGAAACAAAATGTTCCCGACAGGAAGTCATCTC
CTACTATTCCCAGTATTCTCTGGATGAAAAGATGCGCAGCCACATGGCCCTGGACTGGAT
CATGAAGGAGCGGGAGTCGCCAGGAATTCTCTCCCAAGAGCTACGAATGGCCCTGAGGGA
ATTGGAGGAAGCCAGGAAAGCAGGACAAGAACTACGGTTTTACAAAGAAAAGAAAGAAAT
CCTGAGTTTAGCTTTGACTCAGATCTACAGTGATCCTGACACTTCCTCACCCAGTGATGA
TCAGCTGAGCCTTACGGCCCTTTGTGGCTATCACTAGCAAGGCCAGGTCCCAGCTGCCCC
CTTGGGGGCAGAAGCCAGACTCTAACATTAGGAAGGTCATTGAAGGAGGTCATCAGAGGC
TTTAGCACCTATAGCTGCTACCTGAAAGCTGTACTAATTCTCCCTGCCCACCTACTCCAT
TCACAGAATCTCAGAGTAATAGGACCCTTACAGGAGACTTCATCCCATTCAATGCAGTTT
TCCCATAACACCCTCAGTAGTTCCACCCCAGACTGAATGGATAGAGACAGGATTGTTTGA
AAAATATTTTCCAGGACTGCCTTTAACTTTAAGGCTGGTTGACATGGGCCTTGCTAGATT
ATATACATTGTTTCAAAGAATGGGTCAATGTAGTCTTTCCCCAAAAGAACATCAGCCAGG
ACTGGGGAAAGTAGCACCACAGCAATTTTTTAAAAATTCTTGAGATTAAATAACCAATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62648477|ref|XP_575734.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62648477|ref|XP_575734.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               127-365, - strand, RNAz p=0.731292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-365, - strand, RNAz p=0.731292

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               47-780, gnl|bosTau2|chr7 (60026092-60025364)
               

               
               47-780, gnl|Hg17|chr5 (96456498-96455774)
               

               
               47-780, gnl|Mm7|chr17 (15628215-15629079)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-780, gnl|bosTau2|chr7 (60026092-60025364)
               

               
               47-780, gnl|Hg17|chr5 (96456498-96455774)
               

               
               47-780, gnl|Mm7|chr17 (15628215-15629079)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               bla (0.124347)

	47-780, gnl\|bosTau2\|chr7 (60026092-60025364)
	47-780, gnl\|Hg17\|chr5 (96456498-96455774)
	47-780, gnl\|Mm7\|chr17 (15628215-15629079)