Non-Coding RNA Search

Ss1.1-rhea40_l7.5

Sequence:


               
               CCCCTTCTGTTGCTTCACCGCGCGCACGTGGCAAATACGGGCGTGGCGTTCTCCTGTCCT
CTCCCTGCGGTGTCAGGTCTCCGCGTGAGTCTCTCGCGTCCTATCCTGGCCAGGTCGGGC
CGCTCCGGGGGCTGCAGGGTCCGTGGGAACCCGGTGGGCAGAGGCGATCTGCCCCGGGCC
CGGCAGCACCTGCTTGCTGCAGACACAGACCGTGAGCTCGAGGACTCTGGTGTCCTGTTT
CCCTTGACCTTGAGGACCTGGGAAGGTCACATACGCCATGGCTATGACTAGTGTCCGATT
GCCCAGCAGCGTTTTAAGAAAGCCAGAGGCCTGGATCGGACTCTGTGGAGCGCTACGAGG
GACACCTTCACACAAGCGCTGTGCATCCTTGAACCGATACATCTGTTTTTCTACAAAGTG
GAAGATGCATTCTACAAAGGCGAACTCAGGCTGAATGGGGAAAAATTGTGGAAGAAAAGC
AGAACGGTAAAAGTGGGAGATACATTGGATCTTCTCATTGAAGATGATAAAGCAGCAGAA
ACAGAGACAGTGATGCGGATTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTTCTGTTGCTTCACCGCGCGCACGTGGCAAATACGGGCGTGGCGTTCTCCTGTCCT
CTCCCTGCGGTGTCAGGTCTCCGCGTGAGTCTCTCGCGTCCTATCCTGGCCAGGTCGGGC
CGCTCCGGGGGCTGCAGGGTCCGTGGGAACCCGGTGGGCAGAGGCGATCTGCCCCGGGCC
CGGCAGCACCTGCTTGCTGCAGACACAGACCGTGAGCTCGAGGACTCTGGTGTCCTGTTT
CCCTTGACCTTGAGGACCTGGGAAGGTCACATACGCCATGGCTATGACTAGTGTCCGATT
GCCCAGCAGCGTTTTAAGAAAGCCAGAGGCCTGGATCGGACTCTGTGGAGCGCTACGAGG
GACACCTTCACACAAGCGCTGTGCATCCTTGAACCGATACATCTGTTTTTCTACAAAGTG
GAAGATGCATTCTACAAAGGCGAACTCAGGCTGAATGGGGAAAAATTGTGGAAGAAAAGC
AGAACGGTAAAAGTGGGAGATACATTGGATCTTCTCATTGAAGATGATAAAGCAGCAGAA
ACAGAGACAGTGATGCGGATTCTC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-267, gnl|bosTau2|chr9 (23528502-23528759)
               

               
               1-267, gnl|dasNov1|scaffold_25625 (42758-42241)
               

               
               1-267, gnl|hg17|chr6 (107455951-107456427)
               

               
               1-267, gnl|Hg17|chr6 (107456209-107456453)
               

               
               1-267, gnl|loxAfr1|scaffold_1276 (79665-79136)
               

               
               1-267, gnl|mm7|chr10 (43351493-43351029)
               

               
               1-267, gnl|Mm7|chr10 (43351247-43350999)
               

               
               1-267, gnl|oryCun1|scaffold_104881 (567-1002)
               

               
               1-267, gnl|rheMac2|chr4 (103051479-103051944)
               

               
               1-267, gnl|rn3|chr20 (47495151-47494717)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr9 (23528502-23528759)
               

               
               1-267, gnl|dasNov1|scaffold_25625 (42758-42241)
               

               
               1-267, gnl|hg17|chr6 (107455951-107456427)
               

               
               1-267, gnl|Hg17|chr6 (107456209-107456453)
               

               
               1-267, gnl|loxAfr1|scaffold_1276 (79665-79136)
               

               
               1-267, gnl|mm7|chr10 (43351493-43351029)
               

               
               1-267, gnl|Mm7|chr10 (43351247-43350999)
               

               
               1-267, gnl|oryCun1|scaffold_104881 (567-1002)
               

               
               1-267, gnl|rheMac2|chr4 (103051479-103051944)
               

               
               1-267, gnl|rn3|chr20 (47495151-47494717)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ste (0.135208)

	1-267, gnl\|bosTau2\|chr9 (23528502-23528759)
	1-267, gnl\|dasNov1\|scaffold_25625 (42758-42241)
	1-267, gnl\|hg17\|chr6 (107455951-107456427)
	1-267, gnl\|Hg17\|chr6 (107456209-107456453)
	1-267, gnl\|loxAfr1\|scaffold_1276 (79665-79136)
	1-267, gnl\|mm7\|chr10 (43351493-43351029)
	1-267, gnl\|Mm7\|chr10 (43351247-43350999)
	1-267, gnl\|oryCun1\|scaffold_104881 (567-1002)
	1-267, gnl\|rheMac2\|chr4 (103051479-103051944)
	1-267, gnl\|rn3\|chr20 (47495151-47494717)