Non-Coding RNA Search

Ss1.1-rhea40_n11.5

Sequence:


               
               TGAGGAATACCCTGACCCTCCAATACCCCACAGCTATTCTAGTGATAGAATCCACAGCTT
AAGTTCAAATAAGCCACAGCGTCCTGTGTTTACTCATGAAAACATTCAAGGTGGGGGGGA
ACCGTTTCAGGCTCTGTATAACTATACTCCTAGGAACGAAGATGAGCTGGAGCTCAGAGA
AAGCGATGTCATTGACGTGATGGAAAAATGTGATGACGGATGGTTTGTGGGAACCTCAAG
AAGAACCAAATTCTTTGGTACTTTTCCCGGAAACTATGTCAAGAGGCTGTGAATCACTCT
CCCGCATTATTTATGCCGCATCTCAGCCCCATCTCTGCAGAACTTTGCCTGAAAGATCCC
TGCAGGCCTCCTGCTGTTATGCCTTCCAGTTTCCAACAGAAATCACCCACTGTCACCATC
TCCACCTGCCACCAAACCACCAGCAACGGACCTGCCGCCGCCAAGCCTTGGGGAGATTGG
CGGATCTGCTTCCACGTGAAAGCACTTATTCCTGCTTTCTGCTTTAAACTTCGATAAGTC
GATATGTGGCATCAGAAAGAAAATCATTATACTTATTGAGGGTTGAGTATTTGAGGCAAA
AAAAAAAAAAAAATATTACTGTCTCAAAGAGGCTCCCTGGTCCACTTTGGAAGATGTTCT
CCCCCAGGCAACCAAGTTTATTACTACTTGCTGTGGTTTGCATTTTCACCTTCTTAGCTT
GGCAGTATATTTTCCTTTCACAAGTCTGCCTAGTGTCCTGGTTTACACGATATGACAACT
GTACTTCAGCTATTGTTTGCCTGCACTTATATGTTGTAATATGCACAGTGATTACAAAAT
CTAAAGCAAGAGTAGGAAAGTTAATTCGAATGAGTGTGATTTTGTTGAATTGAACGTGAG
TTTCAAATAGGAGTCTTTTCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGAATACCCTGACCCTCCAATACCCCACAGCTATTCTAGTGATAGAATCCACAGCTT
AAGTTCAAATAAGCCACAGCGTCCTGTGTTTACTCATGAAAACATTCAAGGTGGGGGGGA
ACCGTTTCAGGCTCTGTATAACTATACTCCTAGGAACGAAGATGAGCTGGAGCTCAGAGA
AAGCGATGTCATTGACGTGATGGAAAAATGTGATGACGGATGGTTTGTGGGAACCTCAAG
AAGAACCAAATTCTTTGGTACTTTTCCCGGAAACTATGTCAAGAGGCTGTGAATCACTCT
CCCGCATTATTTATGCCGCATCTCAGCCCCATCTCTGCAGAACTTTGCCTGAAAGATCCC
TGCAGGCCTCCTGCTGTTATGCCTTCCAGTTTCCAACAGAAATCACCCACTGTCACCATC
TCCACCTGCCACCAAACCACCAGCAACGGACCTGCCGCCGCCAAGCCTTGGGGAGATTGG
CGGATCTGCTTCCACGTGAAAGCACTTATTCCTGCTTTCTGCTTTAAACTTCGATAAGTC
GATATGTGGCATCAGAAAGAAAATCATTATACTTATTGAGGGTTGAGTATTTGAGGCAAA
AAAAAAAAAAAAATATTACTGTCTCAAAGAGGCTCCCTGGTCCACTTTGGAAGATGTTCT
CCCCCAGGCAACCAAGTTTATTACTACTTGCTGTGGTTTGCATTTTCACCTTCTTAGCTT
GGCAGTATATTTTCCTTTCACAAGTCTGCCTAGTGTCCTGGTTTACACGATATGACAACT
GTACTTCAGCTATTGTTTGCCTGCACTTATATGTTGTAATATGCACAGTGATTACAAAAT
CTAAAGCAAGAGTAGGAAAGTTAATTCGAATGAGTGTGATTTTGTTGAATTGAACGTGAG
TTTCAAATAGGAGTCTTTTCCTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26334163|dbj|BAC30799.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26334163|dbj|BAC30799.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               526-635, + strand, RNAz p=0.665693

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               526-635, + strand, RNAz p=0.665693

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AF049884, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF049884, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               230-924, gnl|bosTau2|chr27 (9362247-9362924)
               

               
               230-924, gnl|Hg17|chr4 (186883992-186883267)
               

               
               230-924, gnl|Mm7|chr8 (44603601-44604353)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-924, gnl|bosTau2|chr27 (9362247-9362924)
               

               
               230-924, gnl|Hg17|chr4 (186883992-186883267)
               

               
               230-924, gnl|Mm7|chr8 (44603601-44604353)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               hea (0.408998)
               

               
               pan (0.23596)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               pan (0.23596)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	230-924, gnl\|bosTau2\|chr27 (9362247-9362924)
	230-924, gnl\|Hg17\|chr4 (186883992-186883267)
	230-924, gnl\|Mm7\|chr8 (44603601-44604353)

	hea (0.408998)
	pan (0.23596)
	lun (0.150489)
	liv (0.146284)
	kid (0.129735)
	bla (0.124347)