Non-Coding RNA Search

Ss1.1-rhlv02b_c24.5

Sequence:


               
               ATCTCATTAGCACTGTGCCTAATGCCATACAGTGCACAGTGCCTGCCACGTAGCAGGTGC
TCAGTACCTGAGGGAAGAAGGAAGCAGGGGACATGTGTCTCCTGATTGCTTGGCTCTTTT
GCCAGTGTCCTCTTCTGGGGCGGCTGGCGTCCGCTACTCGTGTCATCCAGCTGCTGCGGA
ACTGGGCATCCGGGCGAGACTTACAGGCGAAGCTGCAGCTGCGTTACCAGGAGATCTCCA
AGCGAACTCAGCCTCCTCCCAAGCTCCCCGTGGGCCCCAGCCACAAACTCTCCAATAATT
ACTACTGCACTCGCGATGGCCGCCGGGAAGCCATGCCGCCCTCCATCGTCATGTCCTCAC
AGAAGGTGCTGGCATCGGGCAAGCCAGCAGAGAGCTCAGCTGTGGCAGAGACTGAGAAGA
AAGCTGTGACGCCGGCTCCTCCCATAAAGAGGTGGGAGTTGTCCAAGGATCAGCCATACC
TGTGACACTGCCCTGGGGCACCTGGCTAAGCCCTCAGGGCCACCAGAATGCTTCTCACTC
CTTGGACTCCTTGGATTCCCTCTGGGGAGAATGTGACCTAATTTATAAAAATATATATAT
TGTGCTCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCATTAGCACTGTGCCTAATGCCATACAGTGCACAGTGCCTGCCACGTAGCAGGTGC
TCAGTACCTGAGGGAAGAAGGAAGCAGGGGACATGTGTCTCCTGATTGCTTGGCTCTTTT
GCCAGTGTCCTCTTCTGGGGCGGCTGGCGTCCGCTACTCGTGTCATCCAGCTGCTGCGGA
ACTGGGCATCCGGGCGAGACTTACAGGCGAAGCTGCAGCTGCGTTACCAGGAGATCTCCA
AGCGAACTCAGCCTCCTCCCAAGCTCCCCGTGGGCCCCAGCCACAAACTCTCCAATAATT
ACTACTGCACTCGCGATGGCCGCCGGGAAGCCATGCCGCCCTCCATCGTCATGTCCTCAC
AGAAGGTGCTGGCATCGGGCAAGCCAGCAGAGAGCTCAGCTGTGGCAGAGACTGAGAAGA
AAGCTGTGACGCCGGCTCCTCCCATAAAGAGGTGGGAGTTGTCCAAGGATCAGCCATACC
TGTGACACTGCCCTGGGGCACCTGGCTAAGCCCTCAGGGCCACCAGAATGCTTCTCACTC
CTTGGACTCCTTGGATTCCCTCTGGGGAGAATGTGACCTAATTTATAAAAATATATATAT
TGTGCTCTCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|580|emb|CAA48575.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|580|emb|CAA48575.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               432-547, - strand, RNAz p=0.969548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-547, - strand, RNAz p=0.969548

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               393-612, gnl|bosTau2|chr7 (11923908-11923694)
               

               
               393-612, gnl|Hg17|chr19 (8282481-8282296)
               

               
               393-612, gnl|Mm7|chr17 (31912130-31912329)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               393-612, gnl|bosTau2|chr7 (11923908-11923694)
               

               
               393-612, gnl|Hg17|chr19 (8282481-8282296)
               

               
               393-612, gnl|Mm7|chr17 (31912130-31912329)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               hlv (0.696282)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               pty (0.428143)
               

               
               mas (0.42061)
               

               
               nca (0.410621)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.696282)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               pty (0.428143)
               

               
               mas (0.42061)
               

               
               nca (0.410621)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	393-612, gnl\|bosTau2\|chr7 (11923908-11923694)
	393-612, gnl\|Hg17\|chr19 (8282481-8282296)
	393-612, gnl\|Mm7\|chr17 (31912130-31912329)

	hlv (0.696282)
	ece (0.45861)
	cag (0.453583)
	pty (0.428143)
	mas (0.42061)
	nca (0.410621)
	eru (0.360144)
	ton (0.351)
	eye (0.341006)
	hyp (0.285673)
	cst (0.280073)
	ese (0.253004)
	nms (0.213858)
	hea (0.204499)
	nbm (0.198649)
	col (0.195008)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	cut (0.169924)
	fhi (0.169578)
	cki (0.165235)
	cli (0.152812)
	eli (0.151814)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)
	jej (0.0989218)