Non-Coding RNA Search

Ss1.1-rhlv02b_g1.5

Sequence:


               
               GTGACCCGGGCCCCGCGGGAGCAGAGCGGCGCGTTCCAGCTCCGGGAGCCGGAGAGAGCT
GGGCGCGCCCTACCCCCAGCCCACTGCGACCATGCTGTCCCGCCTGCTGAAAGAACACCA
GGCCAAACAGAATGAACGCAAGGAGCTGCAGGAGAAGAGGAGGCGAGAGGCTATCACTGC
AGCGACCTGCCTGACAGAAGCTTTGGTGGATCACCTCAATGTGGGCGTGGCCCAGGCCTA
CATGAACCAGAGGAAGCTGGACCACGAGGTGAAGACCCTGCAGGTCCAGGCTGCCCAGTT
TGCCAAGCAGACAGGCCAGTGGATCGGGATGGTGGAGAACTTCAACCAGGCACTCAAGGA
AATCGGTGATGTGGAGAACTGGGCTCGGAGCATCGAGCTGGACATGCGCACCATTGCCAC
CGCGCTGGAATATGTCTACAAAGGGCAGCTGCAGTCGGCCCCCTCCTAGCCACACTGCCC
CCCCGCCCCCATCCCTCCTTCCCTCCCCCAGGAAGCCAGGCCACAAATAAAACACAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCCGGGCCCCGCGGGAGCAGAGCGGCGCGTTCCAGCTCCGGGAGCCGGAGAGAGCT
GGGCGCGCCCTACCCCCAGCCCACTGCGACCATGCTGTCCCGCCTGCTGAAAGAACACCA
GGCCAAACAGAATGAACGCAAGGAGCTGCAGGAGAAGAGGAGGCGAGAGGCTATCACTGC
AGCGACCTGCCTGACAGAAGCTTTGGTGGATCACCTCAATGTGGGCGTGGCCCAGGCCTA
CATGAACCAGAGGAAGCTGGACCACGAGGTGAAGACCCTGCAGGTCCAGGCTGCCCAGTT
TGCCAAGCAGACAGGCCAGTGGATCGGGATGGTGGAGAACTTCAACCAGGCACTCAAGGA
AATCGGTGATGTGGAGAACTGGGCTCGGAGCATCGAGCTGGACATGCGCACCATTGCCAC
CGCGCTGGAATATGTCTACAAAGGGCAGCTGCAGTCGGCCCCCTCCTAGCCACACTGCCC
CCCCGCCCCCATCCCTCCTTCCCTCCCCCAGGAAGCCAGGCCACAAATAAAACACAAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R7L8_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R7L8_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               115-307, - strand, RNAz p=0.633663

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-307, - strand, RNAz p=0.633663

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-508, gnl|bosTau2|chr2 (51223366-51223815)
               

               
               51-508, gnl|Hg17|chr12 (54396146-54399701)
               

               
               51-508, gnl|Mm7|chr18 (30889421-30888978)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-508, gnl|bosTau2|chr2 (51223366-51223815)
               

               
               51-508, gnl|Hg17|chr12 (54396146-54399701)
               

               
               51-508, gnl|Mm7|chr18 (30889421-30888978)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               nje (0.49776)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eje (0.197668)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.49776)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eje (0.197668)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	51-508, gnl\|bosTau2\|chr2 (51223366-51223815)
	51-508, gnl\|Hg17\|chr12 (54396146-54399701)
	51-508, gnl\|Mm7\|chr18 (30889421-30888978)

	nje (0.49776)
	elu (0.385356)
	lnt (0.284616)
	cga (0.279096)
	fce (0.271592)
	pla (0.267344)
	ute (0.265569)
	ese (0.253004)
	eje (0.197668)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	hlv (0.139256)
	nmm (0.132802)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	cty (0.10408)