Non-Coding RNA Search

Ss1.1-rhlv02b_n12.5

Sequence:


               
               ACCTACAGCCTCCCAGGAGAAGATGGCCTCCCAAGCAGTGTCCGGGCTTTCCCGGCAGGT
GCGATGCTTCAGTACATCTGTGGTCAGGCCATTTGCCAAGCTTGTGAGGCCACCTGTTCA
GATATACGGTATCGAAGGTCGCTATGCCACTGCTCTTTATTCTGCTGCATCTAAACAGAA
TAAACTGGAACAAGTGGAAAAAGAATTGTTGAGAGTAGCACAAATCTTGAAGGAACCCAA
AGTGGCTGCTTCTATTATGAATCCCTATGTAAAGCGTTCCGTCAAAGTCAAGAGCCTGAG
CGACATGACAGCAAAGGAGAAGTTTTCTCCCCTGACGTCCAACCTGATCAATTTGCTTGC
TGAAAACGGTCGCTTGAGCAGTACCCCTGGCGTCATTTCTGCCTTTTCTACCATGATGAG
TGTCCACCGCGGAGAAGTACCTTGTTCCGTCACCACTGCATCTCCTTTAGATGAAGCCAC
TCTTACAGAGTTAAAAACAGTCCTGAAGAGCTTCCTAAGTAAAGGCCAAATATTGAAGTT
GGAAGTGAAGGTTGATCCATCAATCATGGGCGGAATGATTGTCCGAATTGGAGAGAAATA
TGTTGATATGTCAGCAAAAACCAAGATTCAGAAGCTGAGCAGAGCCATGCGGGAGATTTT
TTAAAAAGTGTTGATTTTCTGTCCATGAAAATTCTTAAACTTGGAGCAACAATAAAATGC
TTCCTGAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTACAGCCTCCCAGGAGAAGATGGCCTCCCAAGCAGTGTCCGGGCTTTCCCGGCAGGT
GCGATGCTTCAGTACATCTGTGGTCAGGCCATTTGCCAAGCTTGTGAGGCCACCTGTTCA
GATATACGGTATCGAAGGTCGCTATGCCACTGCTCTTTATTCTGCTGCATCTAAACAGAA
TAAACTGGAACAAGTGGAAAAAGAATTGTTGAGAGTAGCACAAATCTTGAAGGAACCCAA
AGTGGCTGCTTCTATTATGAATCCCTATGTAAAGCGTTCCGTCAAAGTCAAGAGCCTGAG
CGACATGACAGCAAAGGAGAAGTTTTCTCCCCTGACGTCCAACCTGATCAATTTGCTTGC
TGAAAACGGTCGCTTGAGCAGTACCCCTGGCGTCATTTCTGCCTTTTCTACCATGATGAG
TGTCCACCGCGGAGAAGTACCTTGTTCCGTCACCACTGCATCTCCTTTAGATGAAGCCAC
TCTTACAGAGTTAAAAACAGTCCTGAAGAGCTTCCTAAGTAAAGGCCAAATATTGAAGTT
GGAAGTGAAGGTTGATCCATCAATCATGGGCGGAATGATTGTCCGAATTGGAGAGAAATA
TGTTGATATGTCAGCAAAAACCAAGATTCAGAAGCTGAGCAGAGCCATGCGGGAGATTTT
TTAAAAAGTGTTGATTTTCTGTCCATGAAAATTCTTAAACTTGGAGCAACAATAAAATGC
TTCCTGAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|913531|gb|AAB33087.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|913531|gb|AAB33087.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-477, gnl|bosTau2|chr13 (48319060-48318600)
               

               
               1-477, gnl|Hg17|chr2 (206927119-206926653)
               

               
               1-477, gnl|Mm7|chr12 (82256005-82255534)
               


               
               500-740, gnl|bosTau2|chr13 (48317366-48317145)
               

               
               500-740, gnl|Hg17|chr2 (206926630-206926388)
               

               
               500-740, gnl|Mm7|chr12 (82255511-82255278)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-477, gnl|bosTau2|chr13 (48319060-48318600)
               

               
               1-477, gnl|Hg17|chr2 (206927119-206926653)
               

               
               1-477, gnl|Mm7|chr12 (82256005-82255534)
               


               
               500-740, gnl|bosTau2|chr13 (48317366-48317145)
               

               
               500-740, gnl|Hg17|chr2 (206926630-206926388)
               

               
               500-740, gnl|Mm7|chr12 (82255511-82255278)

Expressed library(ies): 76 entry(ies)

More info

Expressed library(ies): 76 entry(ies)

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               hea (4.90798)
               

               
               ste (4.8675)
               

               
               ssp (4.60767)
               

               
               ldo (3.6861)
               

               
               sme (2.74893)
               

               
               bfe (2.39772)
               

               
               sin (2.27432)
               

               
               sto (2.15789)
               

               
               cbe (2.15311)
               

               
               csk (2.11119)
               

               
               isp (2.10526)
               

               
               che (1.9084)
               

               
               thg (1.90186)
               

               
               bla (1.86521)
               

               
               nms (1.71086)
               

               
               fat (1.47427)
               

               
               lin (1.45603)
               

               
               cst (1.40036)
               

               
               lun (1.3544)
               

               
               ret (1.28733)
               

               
               mas (1.26183)
               

               
               hlv (1.11405)
               

               
               pgl (1.06635)
               

               
               rec (1.03842)
               

               
               ski (1.02715)
               

               
               spc (1.02029)
               

               
               sug (1.01833)
               

               
               vin (0.997672)
               

               
               cki (0.991408)
               

               
               cmu (0.931966)
               

               
               lyg (0.931718)
               

               
               sag (0.913576)
               

               
               ova (0.903926)
               

               
               ton (0.877501)
               

               
               nca (0.821243)
               

               
               tra (0.738552)
               

               
               gul (0.710353)
               

               
               ece (0.687916)
               

               
               kid (0.648677)
               

               
               fco (0.628832)
               

               
               eje (0.593003)
               

               
               cte (0.58548)
               

               
               nlu (0.575043)
               

               
               fce (0.543183)
               

               
               cut (0.509771)
               

               
               fhi (0.508733)
               

               
               nco (0.485201)
               

               
               mga (0.480615)
               

               
               tbr (0.462535)
               

               
               cag (0.453583)
               

               
               lnt (0.426925)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 76 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (4.90798)
               

               
               ste (4.8675)
               

               
               ssp (4.60767)
               

               
               ldo (3.6861)
               

               
               sme (2.74893)
               

               
               bfe (2.39772)
               

               
               sin (2.27432)
               

               
               sto (2.15789)
               

               
               cbe (2.15311)
               

               
               csk (2.11119)
               

               
               isp (2.10526)
               

               
               che (1.9084)
               

               
               thg (1.90186)
               

               
               bla (1.86521)
               

               
               nms (1.71086)
               

               
               fat (1.47427)
               

               
               lin (1.45603)
               

               
               cst (1.40036)
               

               
               lun (1.3544)
               

               
               ret (1.28733)
               

               
               mas (1.26183)
               

               
               hlv (1.11405)
               

               
               pgl (1.06635)
               

               
               rec (1.03842)
               

               
               ski (1.02715)
               

               
               spc (1.02029)
               

               
               sug (1.01833)
               

               
               vin (0.997672)
               

               
               cki (0.991408)
               

               
               cmu (0.931966)
               

               
               lyg (0.931718)
               

               
               sag (0.913576)
               

               
               ova (0.903926)
               

               
               ton (0.877501)
               

               
               nca (0.821243)
               

               
               tra (0.738552)
               

               
               gul (0.710353)
               

               
               ece (0.687916)
               

               
               kid (0.648677)
               

               
               fco (0.628832)
               

               
               eje (0.593003)
               

               
               cte (0.58548)
               

               
               nlu (0.575043)
               

               
               fce (0.543183)
               

               
               cut (0.509771)
               

               
               fhi (0.508733)
               

               
               nco (0.485201)
               

               
               mga (0.480615)
               

               
               tbr (0.462535)
               

               
               cag (0.453583)
               

               
               lnt (0.426925)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	1-477, gnl\|bosTau2\|chr13 (48319060-48318600)
	1-477, gnl\|Hg17\|chr2 (206927119-206926653)
	1-477, gnl\|Mm7\|chr12 (82256005-82255534)

	500-740, gnl\|bosTau2\|chr13 (48317366-48317145)
	500-740, gnl\|Hg17\|chr2 (206926630-206926388)
	500-740, gnl\|Mm7\|chr12 (82255511-82255278)

	hea (4.90798)
	ste (4.8675)
	ssp (4.60767)
	ldo (3.6861)
	sme (2.74893)
	bfe (2.39772)
	sin (2.27432)
	sto (2.15789)
	cbe (2.15311)
	csk (2.11119)
	isp (2.10526)
	che (1.9084)
	thg (1.90186)
	bla (1.86521)
	nms (1.71086)
	fat (1.47427)
	lin (1.45603)
	cst (1.40036)
	lun (1.3544)
	ret (1.28733)
	mas (1.26183)
	hlv (1.11405)
	pgl (1.06635)
	rec (1.03842)
	ski (1.02715)
	spc (1.02029)
	sug (1.01833)
	vin (0.997672)
	cki (0.991408)
	cmu (0.931966)
	lyg (0.931718)
	sag (0.913576)
	ova (0.903926)
	ton (0.877501)
	nca (0.821243)
	tra (0.738552)
	gul (0.710353)
	ece (0.687916)
	kid (0.648677)
	fco (0.628832)
	eje (0.593003)
	cte (0.58548)
	nlu (0.575043)
	fce (0.543183)
	cut (0.509771)
	fhi (0.508733)
	nco (0.485201)
	mga (0.480615)
	tbr (0.462535)
	cag (0.453583)
	lnt (0.426925)
	aor (0.390549)
	col (0.390016)
	elu (0.385356)
	ese (0.379507)
	eep (0.367692)
	ebs (0.354904)
	med (0.348756)
	duo (0.345602)
	jca (0.34188)
	mcp (0.341297)
	cje (0.330469)
	jej (0.296765)
	pty (0.285429)
	mgp (0.230681)
	ecc (0.23007)
	tes (0.207814)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	nje (0.16592)
	eli (0.151814)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)
	cly (0.120642)