Non-Coding RNA Search

Ss1.1-rhlv02b_p11.5

Sequence:


               
               ACGACGCCGGCTGGGCCGGCGCCCGAGAAGTTGGGACCGGCCCCGGCCTGGGTCGGACGG
CGGAGGTGACAGACTTCTGCTCGTCCCATTGACGATGGCGGTGTTTCACGACGAAGTGGA
GATCGAGGACTTCCAATATGACGAGGACTCCGAGACGTACTTCTACCCCTGCCCGTGTGG
GGATAACTTCTGCATCACCAAGGAAGATTTGGAGAATGGGGAAGACGTGGCAACGTGCCC
TAGCTGCTCACTCATTATTAGAGTGATTTATGACAAAGATCAGTTTACTTGTGGAGAGAC
AGTCCCAGCCCCTTCCACCAACAAAGAACTAGTTAAATGCTAAAGAAGACTTCAGGACTT
CAAAGCCTGAACTTTTGGGAATGAGCCAAGGTGGAAGAATCAAATGCAGAGTCACTGGCT
TCTTCATGTGGACCATCATTTTGTAGTTTGCTGTTCATTAGCGTGTGGATTCTTTCCATT
GGCGGCTGGGTTCATCTCCAATTGAAGAAGCAGGTTCACCACATGACATACCCAGGTTTT
GTGCTTAGAACTTTAAAATTGGAAGTGTTCTTAATTTTCCATCCACACTTAAAAGAAGAT
AATTTCAAATCAGTGCTTTCTTTCCCTCAGTTTTGTTGCTTTTATGACTTACACCTAATT
TCATTATCTGACAACAGCATTATCTACCTTAAAGTCATTAAGATGCTTTAATTTAAAAAA
GGGATTTTATTTTTTAGTTGGTCATTAAGATTATTAAAACTAGCCATTTCTTTAATTTCA
CATCATCTTTGCTGTTCTAAACTGAAGGAAATTAGTTGCCTCTTGTCAGTCGGGATTGCA
CCTTCAGTTGGCCATGCCAGTCTTCCAGAGCTAGCAGTTAGTCAAATGTTTGTGTTCTGT
TAAGCATGCCATTTCCGTTATACAACACCTGTTTTTGCTGAAGATGAATTTGAAAATGAG
ATGCCTCTTCTAGTTAAATATGCGCGTGGGTGGAGATCCCCATCCTGACTCAGTGGAAAT
GAATCTGGCTAGTATCCACAAGGATGCAGGTTCAATCCCTGGCCTCTGTCACTGGGTTAG
GAATCCGGCGTTGCCTTGAGCTGTTGTGTAGGTCACAGACACGGCTCGGATCTGGCATTG
CTGTGGCTGTGTTATAGGCCAGCGCCTACAGCTCCGATTCAGCCCCTAGCCTGGGAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGACGCCGGCTGGGCCGGCGCCCGAGAAGTTGGGACCGGCCCCGGCCTGGGTCGGACGG
CGGAGGTGACAGACTTCTGCTCGTCCCATTGACGATGGCGGTGTTTCACGACGAAGTGGA
GATCGAGGACTTCCAATATGACGAGGACTCCGAGACGTACTTCTACCCCTGCCCGTGTGG
GGATAACTTCTGCATCACCAAGGAAGATTTGGAGAATGGGGAAGACGTGGCAACGTGCCC
TAGCTGCTCACTCATTATTAGAGTGATTTATGACAAAGATCAGTTTACTTGTGGAGAGAC
AGTCCCAGCCCCTTCCACCAACAAAGAACTAGTTAAATGCTAAAGAAGACTTCAGGACTT
CAAAGCCTGAACTTTTGGGAATGAGCCAAGGTGGAAGAATCAAATGCAGAGTCACTGGCT
TCTTCATGTGGACCATCATTTTGTAGTTTGCTGTTCATTAGCGTGTGGATTCTTTCCATT
GGCGGCTGGGTTCATCTCCAATTGAAGAAGCAGGTTCACCACATGACATACCCAGGTTTT
GTGCTTAGAACTTTAAAATTGGAAGTGTTCTTAATTTTCCATCCACACTTAAAAGAAGAT
AATTTCAAATCAGTGCTTTCTTTCCCTCAGTTTTGTTGCTTTTATGACTTACACCTAATT
TCATTATCTGACAACAGCATTATCTACCTTAAAGTCATTAAGATGCTTTAATTTAAAAAA
GGGATTTTATTTTTTAGTTGGTCATTAAGATTATTAAAACTAGCCATTTCTTTAATTTCA
CATCATCTTTGCTGTTCTAAACTGAAGGAAATTAGTTGCCTCTTGTCAGTCGGGATTGCA
CCTTCAGTTGGCCATGCCAGTCTTCCAGAGCTAGCAGTTAGTCAAATGTTTGTGTTCTGT
TAAGCATGCCATTTCCGTTATACAACACCTGTTTTTGCTGAAGATGAATTTGAAAATGAG
ATGCCTCTTCTAGTTAAATATGCGCGTGGGTGGAGATCCCCATCCTGACTCAGTGGAAAT
GAATCTGGCTAGTATCCACAAGGATGCAGGTTCAATCCCTGGCCTCTGTCACTGGGTTAG
GAATCCGGCGTTGCCTTGAGCTGTTGTGTAGGTCACAGACACGGCTCGGATCTGGCATTG
CTGTGGCTGTGTTATAGGCCAGCGCCTACAGCTCCGATTCAGCCCCTAGCCTGGGAACCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26986537|ref|NP_758458.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26986537|ref|NP_758458.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               11-446, gnl|bosTau2|chr22 (9029666-9029233)
               

               
               11-446, gnl|Hg17|chr20 (60947378-60947806)
               

               
               11-446, gnl|Mm7|chr13 (103690743-103690339)
               


               
               33-442, gnl|bosTau2|chr19 (28436392-28436793)
               

               
               33-442, gnl|Hg17|chr3 (16281440-16277181)
               

               
               33-442, gnl|Mm7|chr14 (29515210-29512740)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-446, gnl|bosTau2|chr22 (9029666-9029233)
               

               
               11-446, gnl|Hg17|chr20 (60947378-60947806)
               

               
               11-446, gnl|Mm7|chr13 (103690743-103690339)
               


               
               33-442, gnl|bosTau2|chr19 (28436392-28436793)
               

               
               33-442, gnl|Hg17|chr3 (16281440-16277181)
               

               
               33-442, gnl|Mm7|chr14 (29515210-29512740)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               hea (0.613497)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.613497)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	11-446, gnl\|bosTau2\|chr22 (9029666-9029233)
	11-446, gnl\|Hg17\|chr20 (60947378-60947806)
	11-446, gnl\|Mm7\|chr13 (103690743-103690339)

	33-442, gnl\|bosTau2\|chr19 (28436392-28436793)
	33-442, gnl\|Hg17\|chr3 (16281440-16277181)
	33-442, gnl\|Mm7\|chr14 (29515210-29512740)

	hea (0.613497)
	sme (0.305437)
	cte (0.29274)
	hlv (0.278513)
	rec (0.17307)
	mcp (0.170648)
	bfe (0.149858)
	ski (0.146735)
	che (0.136314)
	ste (0.135208)
	sug (0.127291)
	ese (0.126502)
	eep (0.122564)