Non-Coding RNA Search

Ss1.1-rhlv05b_f12.5

Sequence:


               
               CTCTGATATATTCAAGCCTCCCTGACCCACCTTGAACATTCACCATCCCACACTCCCTGG
CACATCTCTTTCACCATCAGCTTCTGTCACCTCTTCCTGGGCAATATTCCCAGGCTTTCC
CTAATCCCAGAACTGCAGCCTGTCATTCACTCCCAACCATGTCCCTGGGGCCACTGAAAT
TCCAGGCAGTAGGGGAAGAAGATGAGGAGGATGAGGAAGAAGAGAGCCTGGACTCTGTAA
AGGCGCTGACGGCCAAGTTGCAGCTGCAGACACGGCGGCCTTCATATCTGGAGTGGTCGG
CCCGGGTCCAGAGCCAGGCCTGGCGCAAGGCCCAAGCTAGACCCGGACCGGAGGGACCTG
GGGCCATCTGTGGCTTTGACTCAATGGAATCTGCCCTTGAGTGGCTCCGACAGGAACTGA
GGACAGAGCCCTGCCTTTGCGGGCCACCACTTAAACGGGGGAAGGCATGGCCTCCCATAC
TGCACCGGCTGAAGGTTGACCAAGCCTGTCACCTGCACCAAGAGTTGCTGAACGATGCCG
AGCTGGAGCTGGAGCTGGATCCTGGGGCCGGCCTGGCCCTGGCCCCGCCTCTGCGGCACC
TGGGCCTCACGCGCATGAACATCANCGCCCGGCGCTTCACCCTCTGCTGATGGCCACCTG
CGTGACCCCTGGGCCACCTGCTACCTCATCCCCTGCCCACCTGGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGATATATTCAAGCCTCCCTGACCCACCTTGAACATTCACCATCCCACACTCCCTGG
CACATCTCTTTCACCATCAGCTTCTGTCACCTCTTCCTGGGCAATATTCCCAGGCTTTCC
CTAATCCCAGAACTGCAGCCTGTCATTCACTCCCAACCATGTCCCTGGGGCCACTGAAAT
TCCAGGCAGTAGGGGAAGAAGATGAGGAGGATGAGGAAGAAGAGAGCCTGGACTCTGTAA
AGGCGCTGACGGCCAAGTTGCAGCTGCAGACACGGCGGCCTTCATATCTGGAGTGGTCGG
CCCGGGTCCAGAGCCAGGCCTGGCGCAAGGCCCAAGCTAGACCCGGACCGGAGGGACCTG
GGGCCATCTGTGGCTTTGACTCAATGGAATCTGCCCTTGAGTGGCTCCGACAGGAACTGA
GGACAGAGCCCTGCCTTTGCGGGCCACCACTTAAACGGGGGAAGGCATGGCCTCCCATAC
TGCACCGGCTGAAGGTTGACCAAGCCTGTCACCTGCACCAAGAGTTGCTGAACGATGCCG
AGCTGGAGCTGGAGCTGGATCCTGGGGCCGGCCTGGCCCTGGCCCCGCCTCTGCGGCACC
TGGGCCTCACGCGCATGAACATCANCGCCCGGCGCTTCACCCTCTGCTGATGGCCACCTG
CGTGACCCCTGGGCCACCTGCTACCTCATCCCCTGCCCACCTGGGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14249192|ref|NP_116037.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14249192|ref|NP_116037.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-348, - strand, RNAz p=0.760268

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-348, - strand, RNAz p=0.760268

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               3-419, gnl|bosTau2|chr2 (73532177-73532599)
               

               
               3-419, gnl|Hg17|chr1 (32381951-32382376)
               

               
               3-419, gnl|Mm7|chr4 (129023167-129022765)
               


               
               480-706, gnl|bosTau2|chr2 (73533286-73533512)
               

               
               480-706, gnl|danRer3|chr17 (2166581-2166825)
               

               
               480-706, gnl|dasNov1|scaffold_75574 (88-295)
               

               
               480-706, gnl|echTel1|scaffold_287410 (44361-44154)
               

               
               480-706, gnl|fr1|chrUn (68532945-68533183)
               

               
               480-706, gnl|galGal2|chr23 (4583565-4583324)
               

               
               480-706, gnl|hg17|chr1 (32383089-32383300)
               

               
               480-706, gnl|Hg17|chr1 (32383125-32383360)
               

               
               480-706, gnl|loxAfr1|scaffold_35153 (37378-37166)
               

               
               480-706, gnl|mm7|chr4 (129021920-129021710)
               

               
               480-706, gnl|Mm7|chr4 (129021882-129021674)
               

               
               480-706, gnl|monDom2|scaffold_43 (7542521-7542269)
               

               
               480-706, gnl|oryCun1|scaffold_202179 (64951-65192)
               

               
               480-706, gnl|panTro1|chr1 (33144230-33144441)
               

               
               480-706, gnl|rn3|chr6 (83749239-83749037)
               

               
               480-706, gnl|tetNig1|chr10 (3115468-3115230)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-419, gnl|bosTau2|chr2 (73532177-73532599)
               

               
               3-419, gnl|Hg17|chr1 (32381951-32382376)
               

               
               3-419, gnl|Mm7|chr4 (129023167-129022765)
               


               
               480-706, gnl|bosTau2|chr2 (73533286-73533512)
               

               
               480-706, gnl|danRer3|chr17 (2166581-2166825)
               

               
               480-706, gnl|dasNov1|scaffold_75574 (88-295)
               

               
               480-706, gnl|echTel1|scaffold_287410 (44361-44154)
               

               
               480-706, gnl|fr1|chrUn (68532945-68533183)
               

               
               480-706, gnl|galGal2|chr23 (4583565-4583324)
               

               
               480-706, gnl|hg17|chr1 (32383089-32383300)
               

               
               480-706, gnl|Hg17|chr1 (32383125-32383360)
               

               
               480-706, gnl|loxAfr1|scaffold_35153 (37378-37166)
               

               
               480-706, gnl|mm7|chr4 (129021920-129021710)
               

               
               480-706, gnl|Mm7|chr4 (129021882-129021674)
               

               
               480-706, gnl|monDom2|scaffold_43 (7542521-7542269)
               

               
               480-706, gnl|oryCun1|scaffold_202179 (64951-65192)
               

               
               480-706, gnl|panTro1|chr1 (33144230-33144441)
               

               
               480-706, gnl|rn3|chr6 (83749239-83749037)
               

               
               480-706, gnl|tetNig1|chr10 (3115468-3115230)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)

	3-419, gnl\|bosTau2\|chr2 (73532177-73532599)
	3-419, gnl\|Hg17\|chr1 (32381951-32382376)
	3-419, gnl\|Mm7\|chr4 (129023167-129022765)

	480-706, gnl\|bosTau2\|chr2 (73533286-73533512)
	480-706, gnl\|danRer3\|chr17 (2166581-2166825)
	480-706, gnl\|dasNov1\|scaffold_75574 (88-295)
	480-706, gnl\|echTel1\|scaffold_287410 (44361-44154)
	480-706, gnl\|fr1\|chrUn (68532945-68533183)
	480-706, gnl\|galGal2\|chr23 (4583565-4583324)
	480-706, gnl\|hg17\|chr1 (32383089-32383300)
	480-706, gnl\|Hg17\|chr1 (32383125-32383360)
	480-706, gnl\|loxAfr1\|scaffold_35153 (37378-37166)
	480-706, gnl\|mm7\|chr4 (129021920-129021710)
	480-706, gnl\|Mm7\|chr4 (129021882-129021674)
	480-706, gnl\|monDom2\|scaffold_43 (7542521-7542269)
	480-706, gnl\|oryCun1\|scaffold_202179 (64951-65192)
	480-706, gnl\|panTro1\|chr1 (33144230-33144441)
	480-706, gnl\|rn3\|chr6 (83749239-83749037)
	480-706, gnl\|tetNig1\|chr10 (3115468-3115230)