Non-Coding RNA Search

Ss1.1-rhlv05b_o6.5

Sequence:


               
               TCGGCCCCCACGAGCTTCGAAGCGGCCCTTGAGCTCACACCCGGCTTTGCCTTAGCGTTA
ACCTGCGCGCCGCCATCGCCGTCATGCTAGGCGCCGCTGTTCGCCGCTGCTCCGTAGCAG
CAGCCGCAGTCGCCCGGGCCAGCCCTCGAGGCCTTCTGCACCCCACTCCGACCCCCGGCC
CCGCCGCCGCTATCCAGTCAATTCGCTGCTACTCCCATGGCTCACATGAGACAGATGAGG
AGTTTGATGCTCGCTGGGTGACATACTTCAATAAGCCAGATATTGATGCTTGGGAATTGC
GTAAAGGGATGAACACGCTTGTTGGCTATGATCTGGTTCCAGAACCCAAAATCATTGATG
CTGCTTTGCGGGCATGCAGACGCTTAAATGATTTTGCTAGTGCCGTTCGCATCCTAGAGG
TTGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTACCCCTATGTCATCCAGGAGCTTA
GACCAACTTTAAATGAACTGGGAATCTCCACTCCAGAGGAACTGGGCCTTGACAAAGTGT
AAACTCCATGGATGAGCTTCCCAAGGATTTATTGATAATGCTACTTGATTATAAACAATC
ACCTGGAAATACTGATGATAACATATTACCTTATTTGAACAAGTTTTCCTTCGTTGAGTA
CCAAACTGTGTATGTAACTTGGACTTTAATAAAAGGGAAATGAGTTTGAACTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGCCCCCACGAGCTTCGAAGCGGCCCTTGAGCTCACACCCGGCTTTGCCTTAGCGTTA
ACCTGCGCGCCGCCATCGCCGTCATGCTAGGCGCCGCTGTTCGCCGCTGCTCCGTAGCAG
CAGCCGCAGTCGCCCGGGCCAGCCCTCGAGGCCTTCTGCACCCCACTCCGACCCCCGGCC
CCGCCGCCGCTATCCAGTCAATTCGCTGCTACTCCCATGGCTCACATGAGACAGATGAGG
AGTTTGATGCTCGCTGGGTGACATACTTCAATAAGCCAGATATTGATGCTTGGGAATTGC
GTAAAGGGATGAACACGCTTGTTGGCTATGATCTGGTTCCAGAACCCAAAATCATTGATG
CTGCTTTGCGGGCATGCAGACGCTTAAATGATTTTGCTAGTGCCGTTCGCATCCTAGAGG
TTGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTACCCCTATGTCATCCAGGAGCTTA
GACCAACTTTAAATGAACTGGGAATCTCCACTCCAGAGGAACTGGGCCTTGACAAAGTGT
AAACTCCATGGATGAGCTTCCCAAGGATTTATTGATAATGCTACTTGATTATAAACAATC
ACCTGGAAATACTGATGATAACATATTACCTTATTTGAACAAGTTTTCCTTCGTTGAGTA
CCAAACTGTGTATGTAACTTGGACTTTAATAAAAGGGAAATGAGTTTGAACTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|40889866|pdb|1V55|R

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40889866|pdb|1V55|R

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               446-564, - strand, RNAz p=0.681697
               

               
               611-725, + strand, RNAz p=0.760726

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               446-564, - strand, RNAz p=0.681697
               

               
               611-725, + strand, RNAz p=0.760726

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-725, gnl|bosTau2|chr18 (1064290-1063626)
               

               
               51-725, gnl|Hg17|chr14 (54777573-54776909)
               

               
               51-725, gnl|Mm7|chr11 (98077799-98078440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-725, gnl|bosTau2|chr18 (1064290-1063626)
               

               
               51-725, gnl|Hg17|chr14 (54777573-54776909)
               

               
               51-725, gnl|Mm7|chr11 (98077799-98078440)

Expressed library(ies): 70 entry(ies)

More info

Expressed library(ies): 70 entry(ies)

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               ssp (3.52351)
               

               
               hea (3.27198)
               

               
               vin (2.99302)
               

               
               che (2.58997)
               

               
               hlv (2.50661)
               

               
               duo (1.90081)
               

               
               sme (1.83262)
               

               
               cje (1.65235)
               

               
               rec (1.38456)
               

               
               ldo (1.35804)
               

               
               isp (1.35338)
               

               
               ste (1.35208)
               

               
               mas (1.26183)
               

               
               ton (1.2285)
               

               
               nms (1.06929)
               

               
               pro (1.02407)
               

               
               cst (0.980255)
               

               
               sin (0.874738)
               

               
               cov (0.792917)
               

               
               fty (0.703359)
               

               
               jej (0.692452)
               

               
               mgp (0.692042)
               

               
               mcp (0.682594)
               

               
               spc (0.680195)
               

               
               bfe (0.599431)
               

               
               csk (0.562984)
               

               
               nmm (0.531209)
               

               
               ill (0.526778)
               

               
               eye (0.511509)
               

               
               bla (0.497389)
               

               
               eru (0.480192)
               

               
               pgl (0.473934)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               tes (0.415628)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               nep (0.36785)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 70 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (3.52351)
               

               
               hea (3.27198)
               

               
               vin (2.99302)
               

               
               che (2.58997)
               

               
               hlv (2.50661)
               

               
               duo (1.90081)
               

               
               sme (1.83262)
               

               
               cje (1.65235)
               

               
               rec (1.38456)
               

               
               ldo (1.35804)
               

               
               isp (1.35338)
               

               
               ste (1.35208)
               

               
               mas (1.26183)
               

               
               ton (1.2285)
               

               
               nms (1.06929)
               

               
               pro (1.02407)
               

               
               cst (0.980255)
               

               
               sin (0.874738)
               

               
               cov (0.792917)
               

               
               fty (0.703359)
               

               
               jej (0.692452)
               

               
               mgp (0.692042)
               

               
               mcp (0.682594)
               

               
               spc (0.680195)
               

               
               bfe (0.599431)
               

               
               csk (0.562984)
               

               
               nmm (0.531209)
               

               
               ill (0.526778)
               

               
               eye (0.511509)
               

               
               bla (0.497389)
               

               
               eru (0.480192)
               

               
               pgl (0.473934)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               tes (0.415628)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               nep (0.36785)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	446-564, - strand, RNAz p=0.681697
	611-725, + strand, RNAz p=0.760726

	51-725, gnl\|bosTau2\|chr18 (1064290-1063626)
	51-725, gnl\|Hg17\|chr14 (54777573-54776909)
	51-725, gnl\|Mm7\|chr11 (98077799-98078440)

	ssp (3.52351)
	hea (3.27198)
	vin (2.99302)
	che (2.58997)
	hlv (2.50661)
	duo (1.90081)
	sme (1.83262)
	cje (1.65235)
	rec (1.38456)
	ldo (1.35804)
	isp (1.35338)
	ste (1.35208)
	mas (1.26183)
	ton (1.2285)
	nms (1.06929)
	pro (1.02407)
	cst (0.980255)
	sin (0.874738)
	cov (0.792917)
	fty (0.703359)
	jej (0.692452)
	mgp (0.692042)
	mcp (0.682594)
	spc (0.680195)
	bfe (0.599431)
	csk (0.562984)
	nmm (0.531209)
	ill (0.526778)
	eye (0.511509)
	bla (0.497389)
	eru (0.480192)
	pgl (0.473934)
	lin (0.436808)
	pty (0.428143)
	tes (0.415628)
	pla (0.401016)
	col (0.390016)
	ova (0.387397)
	nlu (0.383362)
	cmu (0.372787)
	nep (0.36785)
	mgm (0.360685)
	fbs (0.350693)
	med (0.348756)
	cut (0.339847)
	nje (0.33184)
	mga (0.32041)
	eje (0.296501)
	cte (0.29274)
	lyg (0.266205)
	ret (0.257467)
	sug (0.254582)
	thg (0.253582)
	tra (0.246184)
	cly (0.241284)
	cbe (0.239234)
	ebs (0.236602)
	ece (0.229305)
	nbm (0.198649)
	fcc (0.197785)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	lun (0.150489)
	fat (0.147427)
	hyp (0.142837)
	nca (0.136874)
	ute (0.132784)
	eep (0.122564)
	ecc (0.115035)