Non-Coding RNA Search

Ss1.1-rhlv06b_j22.5

Sequence:


               
               AAAAAATATCTTGAATTGACTTGATCATTTAGGTTAGGTTGGGTGCCTTTTATTGCATGG
CTAAGAGATCTGGACTTGATAGTATAGTAATGCATTAATTCAGTAAATGTTTATGAAGCC
CCTATCACTTAGCAAGTACAGAAGGTGCTATTGGGGTTGGGGATACAGTGATGACTTGGT
CTGTCTCTAGGCAGCAGGGAGCCATGTTGGGTTTTTGAAGAGAAGAATGCCATAATGAAG
GCTAGGTTTTTAGGAGGGTTAATCTGGAAGTAGTCTACAGGGTAGATTGTGAGGAAAGGA
ACTTGGAAGCAAGAGGCTGCTGTGTTTGCAGCTGGCTGCACACTGCTACCTCTGCAGAGA
GAATCAGTGTCCTAACGGTAGCGGGTCTGTCTGTGTGCACTGACACAAGCCTTCCTACCG
AGCCCCAGGGGCCCCAGGCTAGAGAGTGCACATAGGGCTGGTGTGAGCACTAACTTCTTT
TCAGGAGAGCAAGAAACACAGTGTGGCTCTCCCATCTTTCGGTTCTGTAAGCACATCACC
CTTCTCTCCTCCTCTTGAGCTGTGTTCTCTGACAGCTGTTTGTTGGTAAAGCCAGCAGCC
CCTAAAGCACGTCCCAGTCGTGTCTCCTCTGTGCTTTCCCCCACGGCTGCTCCTGCACGC
CTCATTTGCTAGGCCACTTTAGTGGTGGAACCATTAGAGGCTGAGTGACTTAAAGGAGAT
TGAGTCTGTCTCGACCCCGAGAGAGAGTGGGATGGATGGATGCATCGTCTCATTTAGAAA
GCTCTCCCTCACACTCCCTCTCTCTCTCCTTTCTCCCCCCACCCATCTCTCTCTGTCTCT
CTCTCTCTCTCTCTCTCTCACACACACAATGTAGGCAGCACTTCTCTTACAGTCTAGGCT
TTCACTCTGCCTTGGGCTGAGCGGAGAAGAGGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATATCTTGAATTGACTTGATCATTTAGGTTAGGTTGGGTGCCTTTTATTGCATGG
CTAAGAGATCTGGACTTGATAGTATAGTAATGCATTAATTCAGTAAATGTTTATGAAGCC
CCTATCACTTAGCAAGTACAGAAGGTGCTATTGGGGTTGGGGATACAGTGATGACTTGGT
CTGTCTCTAGGCAGCAGGGAGCCATGTTGGGTTTTTGAAGAGAAGAATGCCATAATGAAG
GCTAGGTTTTTAGGAGGGTTAATCTGGAAGTAGTCTACAGGGTAGATTGTGAGGAAAGGA
ACTTGGAAGCAAGAGGCTGCTGTGTTTGCAGCTGGCTGCACACTGCTACCTCTGCAGAGA
GAATCAGTGTCCTAACGGTAGCGGGTCTGTCTGTGTGCACTGACACAAGCCTTCCTACCG
AGCCCCAGGGGCCCCAGGCTAGAGAGTGCACATAGGGCTGGTGTGAGCACTAACTTCTTT
TCAGGAGAGCAAGAAACACAGTGTGGCTCTCCCATCTTTCGGTTCTGTAAGCACATCACC
CTTCTCTCCTCCTCTTGAGCTGTGTTCTCTGACAGCTGTTTGTTGGTAAAGCCAGCAGCC
CCTAAAGCACGTCCCAGTCGTGTCTCCTCTGTGCTTTCCCCCACGGCTGCTCCTGCACGC
CTCATTTGCTAGGCCACTTTAGTGGTGGAACCATTAGAGGCTGAGTGACTTAAAGGAGAT
TGAGTCTGTCTCGACCCCGAGAGAGAGTGGGATGGATGGATGCATCGTCTCATTTAGAAA
GCTCTCCCTCACACTCCCTCTCTCTCTCCTTTCTCCCCCCACCCATCTCTCTCTGTCTCT
CTCTCTCTCTCTCTCTCTCACACACACAATGTAGGCAGCACTTCTCTTACAGTCTAGGCT
TTCACTCTGCCTTGGGCTGAGCGGAGAAGAGGAGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               242-361, - strand, RNAz p=0.855586
               

               
               682-841, - strand, RNAz p=0.944781

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-361, - strand, RNAz p=0.855586
               

               
               682-841, - strand, RNAz p=0.944781

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               687-766, EST100388 Pancreas tumor I Homo sapiens cDNA 5' end, mRNA sequence 
(gb|AA295163.1|), blast E-value=5e-32, identity=97.5% 
               

               
               682-780, RC1-OT0083-220300-021-e02 OT0083 Homo sapiens cDNA, mRNA sequence 
(gb|AW886575.1|), blast E-value=0, identity=100% 
               

               
               682-780, 603025135F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI754595.1|), 
blast E-value=0, identity=100% 
               

               
               682-780, AGENCOURT_15342642 Lupski_anterior_horn Homo sapiens cDNA clone 
(gb|CF453895.1|), blast E-value=1.4013e-45, identity=98.99% 
               

               
               682-780, DG14-232e14 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO714644.1|), blast E-value=4e-36, identity=94.95% 
               

               
               688-780, ya83g11.r2 Stratagene fetal spleen (#937205) Homo sapiens cDNA 
(gb|T56951.1|), blast E-value=6.02558e-44, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               687-766, EST100388 Pancreas tumor I Homo sapiens cDNA 5' end, mRNA sequence 
(gb|AA295163.1|), blast E-value=5e-32, identity=97.5% 
               

               
               682-780, RC1-OT0083-220300-021-e02 OT0083 Homo sapiens cDNA, mRNA sequence 
(gb|AW886575.1|), blast E-value=0, identity=100% 
               

               
               682-780, 603025135F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI754595.1|), 
blast E-value=0, identity=100% 
               

               
               682-780, AGENCOURT_15342642 Lupski_anterior_horn Homo sapiens cDNA clone 
(gb|CF453895.1|), blast E-value=1.4013e-45, identity=98.99% 
               

               
               682-780, DG14-232e14 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO714644.1|), blast E-value=4e-36, identity=94.95% 
               

               
               688-780, ya83g11.r2 Stratagene fetal spleen (#937205) Homo sapiens cDNA 
(gb|T56951.1|), blast E-value=6.02558e-44, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-889, gnl|bosTau2|chr26 (12941077-12941933)
               

               
               4-889, gnl|Hg17|chr10 (102274771-102273987)
               

               
               4-889, gnl|Mm7|chr19 (44445323-44444534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-889, gnl|bosTau2|chr26 (12941077-12941933)
               

               
               4-889, gnl|Hg17|chr10 (102274771-102273987)
               

               
               4-889, gnl|Mm7|chr19 (44445323-44444534)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               cbl (0.114797)

	242-361, - strand, RNAz p=0.855586
	682-841, - strand, RNAz p=0.944781

	687-766, EST100388 Pancreas tumor I Homo sapiens cDNA 5' end, mRNA sequence (gb\|AA295163.1\|), blast E-value=5e-32, identity=97.5%
	682-780, RC1-OT0083-220300-021-e02 OT0083 Homo sapiens cDNA, mRNA sequence (gb\|AW886575.1\|), blast E-value=0, identity=100%
	682-780, 603025135F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb\|BI754595.1\|), blast E-value=0, identity=100%
	682-780, AGENCOURT_15342642 Lupski_anterior_horn Homo sapiens cDNA clone (gb\|CF453895.1\|), blast E-value=1.4013e-45, identity=98.99%
	682-780, DG14-232e14 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO714644.1\|), blast E-value=4e-36, identity=94.95%
	688-780, ya83g11.r2 Stratagene fetal spleen (#937205) Homo sapiens cDNA (gb\|T56951.1\|), blast E-value=6.02558e-44, identity=100%

	4-889, gnl\|bosTau2\|chr26 (12941077-12941933)
	4-889, gnl\|Hg17\|chr10 (102274771-102273987)
	4-889, gnl\|Mm7\|chr19 (44445323-44444534)