Non-Coding RNA Search

Ss1.1-rhlv07b_b19.5

Sequence:


               
               GAGGAGTTCAACTCAGTGACAGAAACCATCCCTTCCACTCCCCCTTTGGCTGTTTGTCCA
GCCAGTGCTCCCTTAAACACCTTATTGACCAGAATGCCCAAGAAGCCGTCACCCTCTCTC
AGATGCTGACCAGATCACCAGCCATGGAGGCCAGTGGAATTTCCCCAGGTCTTAAAAACA
AAGAGGGCATTGTGCTTCACAGATTCCCCTTGGGAAAAATTGGTTCTGCTGTGAGGATAA
AAATAAAAAAGGAGAGAAAATACTGGAAAACCCTTTTCCCCTCCTGTTCCTCTCCCTTTC
TGACTGCCAACTGAGAGTGCCAAGAGGAGGTGTGATGACAACTAGGGAAGCCCCCAGATC
TCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCTGTTAAGAGGGTG
AAGGGGAGGAGAGTCCTGAAATAAAGGAAGAATACCCTAGAGACATGGGTGTCTTCCTGC
CCTTTCCTCCAGATGCCTGGCAAGGGGGCTGAGTCTTACTGTTTTCAGTGTCATCCACCT
AAATAGAGAAGCATGAGAAAGTGGGACAGAGGAGGTTGAAGACCCAGAAGGGAGCTCAGC
CTCTGTGCCACCTGCCCATCTCTGGGCCCTTCTGCTCATACTTGGATATTATTGGTGGGT
GGAGAGAAGATGAGGGTAGTGGGGTGGAGGAAACTGATGGGGGTTGCATTTAGGTCAACC
CAGATATTTGTGGGGGACACTTTTATTGTCTGGCACTGGCATTAAGACTCTTTCTCTAAA
AATCCAAAAGACTCTCTTTCCTTCCATCCCTGATGTGTATTTGTTTTGTGAAATGAATGA
TCTTGGATTAGAAATTCTATGAGATCAGTCCTTGATGATGGGGCTCTCGGGAAAGAAAAA
GGAAAAAATATGTGTCGTCTGTCTTAATAAAGTCTGGCCCTACACCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGTTCAACTCAGTGACAGAAACCATCCCTTCCACTCCCCCTTTGGCTGTTTGTCCA
GCCAGTGCTCCCTTAAACACCTTATTGACCAGAATGCCCAAGAAGCCGTCACCCTCTCTC
AGATGCTGACCAGATCACCAGCCATGGAGGCCAGTGGAATTTCCCCAGGTCTTAAAAACA
AAGAGGGCATTGTGCTTCACAGATTCCCCTTGGGAAAAATTGGTTCTGCTGTGAGGATAA
AAATAAAAAAGGAGAGAAAATACTGGAAAACCCTTTTCCCCTCCTGTTCCTCTCCCTTTC
TGACTGCCAACTGAGAGTGCCAAGAGGAGGTGTGATGACAACTAGGGAAGCCCCCAGATC
TCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCTGTTAAGAGGGTG
AAGGGGAGGAGAGTCCTGAAATAAAGGAAGAATACCCTAGAGACATGGGTGTCTTCCTGC
CCTTTCCTCCAGATGCCTGGCAAGGGGGCTGAGTCTTACTGTTTTCAGTGTCATCCACCT
AAATAGAGAAGCATGAGAAAGTGGGACAGAGGAGGTTGAAGACCCAGAAGGGAGCTCAGC
CTCTGTGCCACCTGCCCATCTCTGGGCCCTTCTGCTCATACTTGGATATTATTGGTGGGT
GGAGAGAAGATGAGGGTAGTGGGGTGGAGGAAACTGATGGGGGTTGCATTTAGGTCAACC
CAGATATTTGTGGGGGACACTTTTATTGTCTGGCACTGGCATTAAGACTCTTTCTCTAAA
AATCCAAAAGACTCTCTTTCCTTCCATCCCTGATGTGTATTTGTTTTGTGAAATGAATGA
TCTTGGATTAGAAATTCTATGAGATCAGTCCTTGATGATGGGGCTCTCGGGAAAGAAAAA
GGAAAAAATATGTGTCGTCTGTCTTAATAAAGTCTGGCCCTACACCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               84-201, - strand, RNAz p=0.77676
               

               
               131-230, - strand, RNAz p=0.995694
               

               
               528-647, - strand, RNAz p=0.963552

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-201, - strand, RNAz p=0.77676
               

               
               131-230, - strand, RNAz p=0.995694
               

               
               528-647, - strand, RNAz p=0.963552

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005266, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005266, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               5-371, gnl|bosTau2|chr3 (19429539-19429905)
               

               
               5-371, gnl|canFam2|chr17 (61368189-61368692)
               

               
               5-371, gnl|dasNov1|scaffold_198390 (2108-2593)
               

               
               5-371, gnl|echTel1|scaffold_311996 (42507-42039)
               

               
               5-371, gnl|hg17|chr1 (144453691-144454179)
               

               
               5-371, gnl|Hg17|chr1 (144454304-144453942)
               

               
               5-371, gnl|loxAfr1|scaffold_95110 (7555-8051)
               

               
               5-371, gnl|mm7|chr3 (96925004-96924546)
               

               
               5-371, gnl|Mm7|chr3 (96924435-96924786)
               

               
               5-371, gnl|monDom2|scaffold_44 (1819512-1820009)
               

               
               5-371, gnl|oryCun1|scaffold_189125 (14071-14545)
               

               
               5-371, gnl|panTro1|chr1 (126977099-126977586)
               

               
               5-371, gnl|rheMac2|chr1 (127182017-127182507)
               

               
               5-371, gnl|rn3|chr2 (191806018-191805540)
               


               
               385-944, gnl|bosTau2|chr3 (19430182-19430752)
               

               
               385-944, gnl|Hg17|chr1 (144453666-144453152)
               

               
               385-944, gnl|Mm7|chr3 (96925026-96925611)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-371, gnl|bosTau2|chr3 (19429539-19429905)
               

               
               5-371, gnl|canFam2|chr17 (61368189-61368692)
               

               
               5-371, gnl|dasNov1|scaffold_198390 (2108-2593)
               

               
               5-371, gnl|echTel1|scaffold_311996 (42507-42039)
               

               
               5-371, gnl|hg17|chr1 (144453691-144454179)
               

               
               5-371, gnl|Hg17|chr1 (144454304-144453942)
               

               
               5-371, gnl|loxAfr1|scaffold_95110 (7555-8051)
               

               
               5-371, gnl|mm7|chr3 (96925004-96924546)
               

               
               5-371, gnl|Mm7|chr3 (96924435-96924786)
               

               
               5-371, gnl|monDom2|scaffold_44 (1819512-1820009)
               

               
               5-371, gnl|oryCun1|scaffold_189125 (14071-14545)
               

               
               5-371, gnl|panTro1|chr1 (126977099-126977586)
               

               
               5-371, gnl|rheMac2|chr1 (127182017-127182507)
               

               
               5-371, gnl|rn3|chr2 (191806018-191805540)
               


               
               385-944, gnl|bosTau2|chr3 (19430182-19430752)
               

               
               385-944, gnl|Hg17|chr1 (144453666-144453152)
               

               
               385-944, gnl|Mm7|chr3 (96925026-96925611)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               pla (0.133672)

	84-201, - strand, RNAz p=0.77676
	131-230, - strand, RNAz p=0.995694
	528-647, - strand, RNAz p=0.963552

	5-371, gnl\|bosTau2\|chr3 (19429539-19429905)
	5-371, gnl\|canFam2\|chr17 (61368189-61368692)
	5-371, gnl\|dasNov1\|scaffold_198390 (2108-2593)
	5-371, gnl\|echTel1\|scaffold_311996 (42507-42039)
	5-371, gnl\|hg17\|chr1 (144453691-144454179)
	5-371, gnl\|Hg17\|chr1 (144454304-144453942)
	5-371, gnl\|loxAfr1\|scaffold_95110 (7555-8051)
	5-371, gnl\|mm7\|chr3 (96925004-96924546)
	5-371, gnl\|Mm7\|chr3 (96924435-96924786)
	5-371, gnl\|monDom2\|scaffold_44 (1819512-1820009)
	5-371, gnl\|oryCun1\|scaffold_189125 (14071-14545)
	5-371, gnl\|panTro1\|chr1 (126977099-126977586)
	5-371, gnl\|rheMac2\|chr1 (127182017-127182507)
	5-371, gnl\|rn3\|chr2 (191806018-191805540)

	385-944, gnl\|bosTau2\|chr3 (19430182-19430752)
	385-944, gnl\|Hg17\|chr1 (144453666-144453152)
	385-944, gnl\|Mm7\|chr3 (96925026-96925611)