Non-Coding RNA Search

Ss1.1-rhlv08b_n5.5

Sequence:


               
               GTCTGTAGAATGTTCAGTAAGAACTGGTCACCATGAAAAGCTGGAAATTATGACAAGGTT
TACTATTTTTTAAAGTAATTTTGGTTCTTTGGCCAAACACAGTGTGGCTTTAGGTCTCCT
TTATTTGAAATGTCATTTAGTGCCAGTATTTTTTAACTGCATAGTAGCCTCAAAATGATC
ATTTGAGCTTATTTATACATATTATATCCCCCAAAAAGAAGTAAAATAGAATTCAGGTAA
GCAATGATGTTAATGTATTTAATGTCAGTTGCTTATTTTTAAAAAAATAAATTCTCAAGC
TGCAATAAATACAAGAACTTAAATCACAGGCTGATATCCACATATGGCAGTTTAATAGCT
GCTATTCAAAACATTTTTAAGAAACTCTATTCTCTTTTTTAATGGTGTTTCATTACAGAT
CTTGTGCATATTTTTATGTTAAGTTTTAAAATAATTCTTGAATAAAATAGTTCTATTTTT
CACAAGCCTTTTTTTTGGCTACACCCATGACATGTGGAAGTTCCCAGGCTGGGGGTCATA
TCCAAGCTGCAGCTGCGACCTACA------------------------------------
------------AACTCCACAAGCCCAATTTTTTCAGTGGAAGCATTTTCTGTAAAATCA
ATACTATCTACTAAATTAAATGCATGTGTCATTTAAGTATGCCTAAGACTTTCAGTGCAA
TGCACAACACAACCAGGAGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGTAGAATGTTCAGTAAGAACTGGTCACCATGAAAAGCTGGAAATTATGACAAGGTT
TACTATTTTTTAAAGTAATTTTGGTTCTTTGGCCAAACACAGTGTGGCTTTAGGTCTCCT
TTATTTGAAATGTCATTTAGTGCCAGTATTTTTTAACTGCATAGTAGCCTCAAAATGATC
ATTTGAGCTTATTTATACATATTATATCCCCCAAAAAGAAGTAAAATAGAATTCAGGTAA
GCAATGATGTTAATGTATTTAATGTCAGTTGCTTATTTTTAAAAAAATAAATTCTCAAGC
TGCAATAAATACAAGAACTTAAATCACAGGCTGATATCCACATATGGCAGTTTAATAGCT
GCTATTCAAAACATTTTTAAGAAACTCTATTCTCTTTTTTAATGGTGTTTCATTACAGAT
CTTGTGCATATTTTTATGTTAAGTTTTAAAATAATTCTTGAATAAAATAGTTCTATTTTT
CACAAGCCTTTTTTTTGGCTACACCCATGACATGTGGAAGTTCCCAGGCTGGGGGTCATA
TCCAAGCTGCAGCTGCGACCTACA------------------------------------
------------AACTCCACAAGCCCAATTTTTTCAGTGGAAGCATTTTCTGTAAAATCA
ATACTATCTACTAAATTAAATGCATGTGTCATTTAAGTATGCCTAAGACTTTCAGTGCAA
TGCACAACACAACCAGGAGAAAAG

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-496, gnl|bosTau2|chr17 (5433794-5434286)
               

               
               2-496, gnl|Hg17|chr4 (148821726-148822229)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-496, gnl|bosTau2|chr17 (5433794-5434286)
               

               
               2-496, gnl|Hg17|chr4 (148821726-148822229)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)

	2-496, gnl\|bosTau2\|chr17 (5433794-5434286)
	2-496, gnl\|Hg17\|chr4 (148821726-148822229)