Non-Coding RNA Search

Ss1.1-rhlv09b_e10.5

Sequence:


               
               CGCGGCGCCGCGGAGTCAAGATGGAGGAATACGCGCGCGAGCCCTGCCCCTGGCGAATTG
TGGATGACTGTGGTGGGGCCTTCACCATGGGAACCATAGGTGGTGGTATCTTTCAAGCCA
TCAAAGGTTTCCGCAATTCTCCGGTGGGAGTAAACCACAGACTACGAGGGAGTTTGACAG
CTATTAAAACCAGGGCTCCGCAGTTGGGAGGTAGCTTTGCAGTTTGGGGAGGCCTGTTTT
CCACGATCGACTGCGGCATGGCCCAGGTGCGAGGGAAGGAGGACCCCTGGAACTCCATCA
CGAGCGGTGCCTTGACAGGAGCCATCCTGGCAGCAAGAAACGGACCGGTGGCCATGGTCG
GCTCAGCCGCGATGGGTGGCATCCTCCTGGCCTTAATCGAAGGAGCTGGCATCTTGTTGA
CGAGATTTGCCTCTGCACAGTTTCCCAACGGTCCCCCGTTTGCCGAAGACCCCTCCCAGC
TGCCTTCGGCCCAGTTACCGGCCTCGCCTTTTGGAGACTATCGGCAGTATCAGTAGGACT
TCTTTCCCAGAACGCGCCGTGGTTCAAGGAGGGATGTCAGAAGATCAAGTTCAGTCGGTT
TTGAAAACCGTACGTGGGACCACTTGGCCGATGGGCTCCGAAGAGACATTTAGCAACTTT
TTCTATTTAAAGGAACATGGGGAGGGGTCTTAGAAGCTAGTACATTTATTTATTCACACT
TGGATTGCATCTGTGAGCAAAATAAATGTCTAAAATCCTCCAAAGGAAATGGAGGAAGTG
CTTAGAAGATGAAGGAGGAAACAGCGCTGGAGCGGGGCTGCCTTTCCCCGGGGGCTCCTC
TGTCTGGCTTTGTTCTCAGTCACACAATAAAAAGACGCCCAGACATCGCTCATTCTTCTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCGCCGCGGAGTCAAGATGGAGGAATACGCGCGCGAGCCCTGCCCCTGGCGAATTG
TGGATGACTGTGGTGGGGCCTTCACCATGGGAACCATAGGTGGTGGTATCTTTCAAGCCA
TCAAAGGTTTCCGCAATTCTCCGGTGGGAGTAAACCACAGACTACGAGGGAGTTTGACAG
CTATTAAAACCAGGGCTCCGCAGTTGGGAGGTAGCTTTGCAGTTTGGGGAGGCCTGTTTT
CCACGATCGACTGCGGCATGGCCCAGGTGCGAGGGAAGGAGGACCCCTGGAACTCCATCA
CGAGCGGTGCCTTGACAGGAGCCATCCTGGCAGCAAGAAACGGACCGGTGGCCATGGTCG
GCTCAGCCGCGATGGGTGGCATCCTCCTGGCCTTAATCGAAGGAGCTGGCATCTTGTTGA
CGAGATTTGCCTCTGCACAGTTTCCCAACGGTCCCCCGTTTGCCGAAGACCCCTCCCAGC
TGCCTTCGGCCCAGTTACCGGCCTCGCCTTTTGGAGACTATCGGCAGTATCAGTAGGACT
TCTTTCCCAGAACGCGCCGTGGTTCAAGGAGGGATGTCAGAAGATCAAGTTCAGTCGGTT
TTGAAAACCGTACGTGGGACCACTTGGCCGATGGGCTCCGAAGAGACATTTAGCAACTTT
TTCTATTTAAAGGAACATGGGGAGGGGTCTTAGAAGCTAGTACATTTATTTATTCACACT
TGGATTGCATCTGTGAGCAAAATAAATGTCTAAAATCCTCCAAAGGAAATGGAGGAAGTG
CTTAGAAGATGAAGGAGGAAACAGCGCTGGAGCGGGGCTGCCTTTCCCCGGGGGCTCCTC
TGTCTGGCTTTGTTCTCAGTCACACAATAAAAAGACGCCCAGACATCGCTCATTCTTCTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               TI17A_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TI17A_HUMAN

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               3-552, gnl|bosTau2|chr7 (59256952-59256418)
               

               
               3-552, gnl|Hg17|chr1 (191419539-191420039)
               

               
               3-552, gnl|Mm7|chr7 (77094325-77093789)
               


               
               21-367, gnl|bosTau2|chr23 (23443709-23444068)
               

               
               21-367, gnl|Hg17|chrX (48510390-48507514)
               

               
               21-367, gnl|Mm7|chr16 (32001220-32000875)
               


               
               680-866, gnl|bosTau2|chr7 (59256163-59255974)
               

               
               680-866, gnl|Hg17|chr1 (191420205-191420394)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-552, gnl|bosTau2|chr7 (59256952-59256418)
               

               
               3-552, gnl|Hg17|chr1 (191419539-191420039)
               

               
               3-552, gnl|Mm7|chr7 (77094325-77093789)
               


               
               21-367, gnl|bosTau2|chr23 (23443709-23444068)
               

               
               21-367, gnl|Hg17|chrX (48510390-48507514)
               

               
               21-367, gnl|Mm7|chr16 (32001220-32000875)
               


               
               680-866, gnl|bosTau2|chr7 (59256163-59255974)
               

               
               680-866, gnl|Hg17|chr1 (191420205-191420394)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cst (0.420109)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               nlu (0.191681)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               nlu (0.191681)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	3-552, gnl\|bosTau2\|chr7 (59256952-59256418)
	3-552, gnl\|Hg17\|chr1 (191419539-191420039)
	3-552, gnl\|Mm7\|chr7 (77094325-77093789)

	21-367, gnl\|bosTau2\|chr23 (23443709-23444068)
	21-367, gnl\|Hg17\|chrX (48510390-48507514)
	21-367, gnl\|Mm7\|chr16 (32001220-32000875)

	680-866, gnl\|bosTau2\|chr7 (59256163-59255974)
	680-866, gnl\|Hg17\|chr1 (191420205-191420394)

	cst (0.420109)
	nca (0.273748)
	pla (0.267344)
	ebs (0.236602)
	nlu (0.191681)
	hlv (0.139256)
	cov (0.132153)
	cty (0.10408)