Ss1.1-rhlv10b_j18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACCACAGGATCGGCTGCAGCCCCCGTTCTCAGAGGGAAGCGGAGACCATGTCGGACGT GGAGGAGACGGTGGACGAGTACGAGGAGGAGCAGGAAGAAGGAGCTGCAGAAGAAGAGGA AGCCTGGAGACAGGATGGAGACGAGCAGGAGGAGGCAGTGGAAGAAGAGGCTGGAGGCGA GGCTGAGGCTGAGGAGGCCAACGCCGAAGAAGCTGGGCAGGAAGAGGATGGGAGAGAGGC TGAAGATGGCCCGATGGAGGAGTCCAAACCCAAGCCCAGGCTGTTTATGCCCAACCTGGT GCCACCCAAGATCCCCGATGGAGAGAGAGTGGACTTCGATGACATCCACCGGAAGCGCAT GGAAAAGGACCTGAACGAGCTGCAGACGCTGATCGAGGCGCATTTCGAGAACCGCAAGAA GGAGGAGGAGGAGCTGGTCTCTCTCAAAGACAGGATCGAGAAGCGCCGGGCGGAGCGGGC GGAGCAGCAGCGCATCCGGACAGAGCGGGAGAAGGAGCGGCAGACCCGCCTGGCTGAGGA GAGGGCCCGCCGGGAGGAGGAGGAGAACCGGAGGAAGGCTGAGGACGAGGCCCGGAAGAA GAAGGCTCTGTCCAACATGATGCATTTTGGAGGCTACATCCAGAAGGCTCAGACGGAGCG TAAGAGTGGAAAGAGGCAGACGGAGCGGGAGAAGAAGAAGAAGATTCTGGCCGAGAGGAG GAAGGTGCTGGCCATCGACCACCTGAACGAAGACCAGCTCAGGGAGAAGGCCAAGGAGCT GTGGCAAAGCATCTACAACCTGGAGGCGGAGAAGTTTGACCTGCAGGAGAAGTTCAAGCA GCAGAAATACGAGATCAACGTTCTCCGAAACAGGATCAATGATAACCAGAAAGTCTCCAA GACCCGCGGAAAGGCCAAAGTCACTGGACGTTGGAAGTAGAGGTGGCCTCCTTGGAGGCT GAACCTCTTCCTGCAGGGTCCTGCCCTGCACCCCCCAGCCCCTGCTCCCTCCTGGGGTCC TCCGGCCACCAGAGGCTGACTGCCTCTGCAGACCAGGAGCTGGCCTAGCTGGAAACCGCC TTCATGCCTGACCCCACACGCCCGCCCCAACCAGCAATAAAGGACACCACGCACACAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACCACAGGATCGGCTGCAGCCCCCGTTCTCAGAGGGAAGCGGAGACCATGTCGGACGT GGAGGAGACGGTGGACGAGTACGAGGAGGAGCAGGAAGAAGGAGCTGCAGAAGAAGAGGA AGCCTGGAGACAGGATGGAGACGAGCAGGAGGAGGCAGTGGAAGAAGAGGCTGGAGGCGA GGCTGAGGCTGAGGAGGCCAACGCCGAAGAAGCTGGGCAGGAAGAGGATGGGAGAGAGGC TGAAGATGGCCCGATGGAGGAGTCCAAACCCAAGCCCAGGCTGTTTATGCCCAACCTGGT GCCACCCAAGATCCCCGATGGAGAGAGAGTGGACTTCGATGACATCCACCGGAAGCGCAT GGAAAAGGACCTGAACGAGCTGCAGACGCTGATCGAGGCGCATTTCGAGAACCGCAAGAA GGAGGAGGAGGAGCTGGTCTCTCTCAAAGACAGGATCGAGAAGCGCCGGGCGGAGCGGGC GGAGCAGCAGCGCATCCGGACAGAGCGGGAGAAGGAGCGGCAGACCCGCCTGGCTGAGGA GAGGGCCCGCCGGGAGGAGGAGGAGAACCGGAGGAAGGCTGAGGACGAGGCCCGGAAGAA GAAGGCTCTGTCCAACATGATGCATTTTGGAGGCTACATCCAGAAGGCTCAGACGGAGCG TAAGAGTGGAAAGAGGCAGACGGAGCGGGAGAAGAAGAAGAAGATTCTGGCCGAGAGGAG GAAGGTGCTGGCCATCGACCACCTGAACGAAGACCAGCTCAGGGAGAAGGCCAAGGAGCT GTGGCAAAGCATCTACAACCTGGAGGCGGAGAAGTTTGACCTGCAGGAGAAGTTCAAGCA GCAGAAATACGAGATCAACGTTCTCCGAAACAGGATCAATGATAACCAGAAAGTCTCCAA GACCCGCGGAAAGGCCAAAGTCACTGGACGTTGGAAGTAGAGGTGGCCTCCTTGGAGGCT GAACCTCTTCCTGCAGGGTCCTGCCCTGCACCCCCCAGCCCCTGCTCCCTCCTGGGGTCC TCCGGCCACCAGAGGCTGACTGCCTCTGCAGACCAGGAGCTGGCCTAGCTGGAAACCGCC TTCATGCCTGACCCCACACGCCCGCCCCAACCAGCAATAAAGGACACCACGCACACAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 341-458, gnl|bosTau2|chr16 (47135626-47135509) | |
| 341-458, gnl|canFam2|chr7 (4520280-4520152) | |
| 341-458, gnl|danRer3|chr23 (2026133-2025999) | |
| 341-458, gnl|dasNov1|scaffold_288774 (1163-1026) | |
| 341-458, gnl|echTel1|scaffold_270322 (2377-2505) | |
| 341-458, gnl|fr1|chrUn (26982509-26982376) | |
| 341-458, gnl|galGal2|chr32 (319864-319998) | |
| 341-458, gnl|hg17|chr1 (198065962-198066099) | |
| 341-458, gnl|Hg17|chr1 (198066092-198065975) | |
| 341-458, gnl|loxAfr1|scaffold_58296 (2291-2428) | |
| 341-458, gnl|mm7|chr1 (135734317-135734184) | |
| 341-458, gnl|Mm7|chr1 (135734189-135734306) | |
| 341-458, gnl|monDom2|scaffold_13 (730485-730626) | |
| 341-458, gnl|oryCun1|scaffold_130692 (775-912) | |
| 341-458, gnl|panTro1|chr1 (180754774-180754911) | |
| 341-458, gnl|rheMac2|chr1 (169134147-169134010) | |
| 341-458, gnl|rn3|chr13 (48895206-48895073) | |
| 341-458, gnl|tetNig1|chr9 (4629649-4629511) | |
| 536-647, gnl|bosTau2|chr16 (47134690-47134579) | |
| 536-647, gnl|canFam2|chr18 (49167009-49167100) | |
| 536-647, gnl|danRer3|chr7 (34687279-34687194) | |
| 536-647, gnl|echTel1|scaffold_299334 (6004-5914) | |
| 536-647, gnl|fr1|chrUn (237849950-237850037) | |
| 536-647, gnl|galGal2|chr5 (11574235-11574144) | |
| 536-647, gnl|Hg17|chr1 (198064191-198064080) | |
| 536-647, gnl|hg17|chr11 (1912131-1912222) | |
| 536-647, gnl|loxAfr1|scaffold_58296 (611-525) | |
| 536-647, gnl|Mm7|chr1 (135735558-135735669) | |
| 536-647, gnl|mm7|chr7 (138939309-138939400) | |
| 536-647, gnl|monDom2|scaffold_393 (79922-80016) | |
| 536-647, gnl|panTro1|chr9 (2080830-2080921) | |
| 536-647, gnl|rheMac2|chr14 (1822922-1823013) | |
| 536-647, gnl|rn3|chr1 (202918649-202918740) | |
| 536-647, gnl|tetNig1|chrUn_random (26158608-26158695) | |
| 536-647, gnl|xenTro1|scaffold_389 (660514-660601) | |
| 650-763, gnl|bosTau2|chr16 (47133708-47133595) | |
| 650-763, gnl|Hg17|chr1 (198062810-198062697) | |
| 650-763, gnl|Mm7|chr1 (135736916-135737029) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 341-458, gnl|bosTau2|chr16 (47135626-47135509) | |
| 341-458, gnl|canFam2|chr7 (4520280-4520152) | |
| 341-458, gnl|danRer3|chr23 (2026133-2025999) | |
| 341-458, gnl|dasNov1|scaffold_288774 (1163-1026) | |
| 341-458, gnl|echTel1|scaffold_270322 (2377-2505) | |
| 341-458, gnl|fr1|chrUn (26982509-26982376) | |
| 341-458, gnl|galGal2|chr32 (319864-319998) | |
| 341-458, gnl|hg17|chr1 (198065962-198066099) | |
| 341-458, gnl|Hg17|chr1 (198066092-198065975) | |
| 341-458, gnl|loxAfr1|scaffold_58296 (2291-2428) | |
| 341-458, gnl|mm7|chr1 (135734317-135734184) | |
| 341-458, gnl|Mm7|chr1 (135734189-135734306) | |
| 341-458, gnl|monDom2|scaffold_13 (730485-730626) | |
| 341-458, gnl|oryCun1|scaffold_130692 (775-912) | |
| 341-458, gnl|panTro1|chr1 (180754774-180754911) | |
| 341-458, gnl|rheMac2|chr1 (169134147-169134010) | |
| 341-458, gnl|rn3|chr13 (48895206-48895073) | |
| 341-458, gnl|tetNig1|chr9 (4629649-4629511) | |
| 536-647, gnl|bosTau2|chr16 (47134690-47134579) | |
| 536-647, gnl|canFam2|chr18 (49167009-49167100) | |
| 536-647, gnl|danRer3|chr7 (34687279-34687194) | |
| 536-647, gnl|echTel1|scaffold_299334 (6004-5914) | |
| 536-647, gnl|fr1|chrUn (237849950-237850037) | |
| 536-647, gnl|galGal2|chr5 (11574235-11574144) | |
| 536-647, gnl|Hg17|chr1 (198064191-198064080) | |
| 536-647, gnl|hg17|chr11 (1912131-1912222) | |
| 536-647, gnl|loxAfr1|scaffold_58296 (611-525) | |
| 536-647, gnl|Mm7|chr1 (135735558-135735669) | |
| 536-647, gnl|mm7|chr7 (138939309-138939400) | |
| 536-647, gnl|monDom2|scaffold_393 (79922-80016) | |
| 536-647, gnl|panTro1|chr9 (2080830-2080921) | |
| 536-647, gnl|rheMac2|chr14 (1822922-1823013) | |
| 536-647, gnl|rn3|chr1 (202918649-202918740) | |
| 536-647, gnl|tetNig1|chrUn_random (26158608-26158695) | |
| 536-647, gnl|xenTro1|scaffold_389 (660514-660601) | |
| 650-763, gnl|bosTau2|chr16 (47133708-47133595) | |
| 650-763, gnl|Hg17|chr1 (198062810-198062697) | |
| 650-763, gnl|Mm7|chr1 (135736916-135737029) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| hlv (12.1153) | |
| hea (1.63599) | |
| che (1.09051) | |
| ese (0.253004) | |
| tbr (0.154178) | |
| cst (0.140036) | |
| cov (0.132153) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (12.1153) | |
| hea (1.63599) | |
| che (1.09051) | |
| ese (0.253004) | |
| tbr (0.154178) | |
| cst (0.140036) | |
| cov (0.132153) |