Non-Coding RNA Search

Ss1.1-rhlv10b_l1.5

Sequence:


               
               GATCCCAGTGCCCCAGCTGCAAAACTGCCTGCCTTCCCGGTGAGCTGCCAGCTCCCACAG
CCATCCCCCGGCCTAAGGTGAGGGGCTGCTGCAATTACCAAGGCAAAGTCTGGTCCCTTC
TTCAGCCTCAGTTTCCCCCTCTGTTAAAGGGGTTTAATCTTCCAGCCTAGCCTATTGGCA
GGGCTGATGGGGGAATCAAACAGGATGGAGAAGCGAAGCCCATCCGCCCGCCCGTGGGAG
CTGACAGGGTGAGTCACTGGCTGAACCGCTGTTCCTTTCCGCGCCTGGCCAGTCCCCCTC
CCCTGCCCCGCCTGCCCCTCCCTCTCCTTGGTGCCTGTCCACTGCTGATCAGCAGGGACT
GCGGGGAGGGTGGGTGCGAGGAGAGCTACCCTTTGCAGGTTATTAGGCTTCCATCCATGG
CTCCGACCAGACTTGCTGCATGGATGAGCCCCTTCCCTGCTGTGGTCCTCAGCTCCCACC
AGAGGGAGCTGAGCTGGAGGACTCCCACCTCCCGTCCGCCGTACCCCTCTCTGGACGCTA
GAGAAGTGGGTCCCTACCCCAGGCCAAGGTGGCCGTGCCTGGCGGTGGGCAGCCAGCCAG
TGTGGCCCACAGGCTACTGGCGTGACCTCGAGGTGGAAGGCAGGGTAGGCTGGCAGGCAA
AGCGGCCCAGCGCTCACTCTACCAGGCAGGCAAACATCCCGTCGATGCAAAAACTCCAGA
CTTAAGATGAGTCCGTGACTTAAAAGCACTCACCTGGAGGTGCGCCCAGCGAGGGCTGGT
CCTAACCCACTGCCTCCCGTCTCCCTTCAAAGGGGGACCCTCTGGGGGATGTGTTTGCCA
GATTCCCCGTGCTGGTTTCTTTGTTACTATTTGTTTGGGGGTTTGTTTCCGTTCTTTTTT
TATAACATGTGGCTGTGAACTTGAATGACCACTGCTCAAACTTTCTGCTATTGTGGGGCT
GGGGGGAAGAAGGGGTGTCTGTTTTATTATTGGTGTTTTCAGTGCAATAAAAAGCTACAA
ACTTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCCAGTGCCCCAGCTGCAAAACTGCCTGCCTTCCCGGTGAGCTGCCAGCTCCCACAG
CCATCCCCCGGCCTAAGGTGAGGGGCTGCTGCAATTACCAAGGCAAAGTCTGGTCCCTTC
TTCAGCCTCAGTTTCCCCCTCTGTTAAAGGGGTTTAATCTTCCAGCCTAGCCTATTGGCA
GGGCTGATGGGGGAATCAAACAGGATGGAGAAGCGAAGCCCATCCGCCCGCCCGTGGGAG
CTGACAGGGTGAGTCACTGGCTGAACCGCTGTTCCTTTCCGCGCCTGGCCAGTCCCCCTC
CCCTGCCCCGCCTGCCCCTCCCTCTCCTTGGTGCCTGTCCACTGCTGATCAGCAGGGACT
GCGGGGAGGGTGGGTGCGAGGAGAGCTACCCTTTGCAGGTTATTAGGCTTCCATCCATGG
CTCCGACCAGACTTGCTGCATGGATGAGCCCCTTCCCTGCTGTGGTCCTCAGCTCCCACC
AGAGGGAGCTGAGCTGGAGGACTCCCACCTCCCGTCCGCCGTACCCCTCTCTGGACGCTA
GAGAAGTGGGTCCCTACCCCAGGCCAAGGTGGCCGTGCCTGGCGGTGGGCAGCCAGCCAG
TGTGGCCCACAGGCTACTGGCGTGACCTCGAGGTGGAAGGCAGGGTAGGCTGGCAGGCAA
AGCGGCCCAGCGCTCACTCTACCAGGCAGGCAAACATCCCGTCGATGCAAAAACTCCAGA
CTTAAGATGAGTCCGTGACTTAAAAGCACTCACCTGGAGGTGCGCCCAGCGAGGGCTGGT
CCTAACCCACTGCCTCCCGTCTCCCTTCAAAGGGGGACCCTCTGGGGGATGTGTTTGCCA
GATTCCCCGTGCTGGTTTCTTTGTTACTATTTGTTTGGGGGTTTGTTTCCGTTCTTTTTT
TATAACATGTGGCTGTGAACTTGAATGACCACTGCTCAAACTTTCTGCTATTGTGGGGCT
GGGGGGAAGAAGGGGTGTCTGTTTTATTATTGGTGTTTTCAGTGCAATAAAAAGCTACAA
ACTTCAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-253, - strand, RNAz p=0.995607
               

               
               259-512, - strand, RNAz p=0.999997

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-253, - strand, RNAz p=0.995607
               

               
               259-512, - strand, RNAz p=0.999997

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_171825, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_171825, -

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-512, gnl|bosTau2|chr7 (38813132-38812622)
               

               
               1-512, gnl|canFam2|chr4 (62068861-62068095)
               

               
               1-512, gnl|hg17|chr5 (149579711-149580459)
               

               
               1-512, gnl|Hg17|chr5 (149580417-149579910)
               

               
               1-512, gnl|loxAfr1|scaffold_44328 (1437-582)
               

               
               1-512, gnl|mm7|chr18 (61376992-61376320)
               

               
               1-512, gnl|oryCun1|scaffold_90209 (7138-7670)
               

               
               1-512, gnl|panTro1|chr4 (156488242-156488989)
               

               
               1-512, gnl|rheMac2|chr6 (146699770-146700519)
               

               
               1-512, gnl|rn3|chr18 (57023428-57022761)
               


               
               743-1025, gnl|bosTau2|chr7 (38812323-38812042)
               

               
               743-1025, gnl|Hg17|chr5 (149579561-149579253)
               

               
               743-1025, gnl|Mm7|chr18 (61377104-61377433)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-512, gnl|bosTau2|chr7 (38813132-38812622)
               

               
               1-512, gnl|canFam2|chr4 (62068861-62068095)
               

               
               1-512, gnl|hg17|chr5 (149579711-149580459)
               

               
               1-512, gnl|Hg17|chr5 (149580417-149579910)
               

               
               1-512, gnl|loxAfr1|scaffold_44328 (1437-582)
               

               
               1-512, gnl|mm7|chr18 (61376992-61376320)
               

               
               1-512, gnl|oryCun1|scaffold_90209 (7138-7670)
               

               
               1-512, gnl|panTro1|chr4 (156488242-156488989)
               

               
               1-512, gnl|rheMac2|chr6 (146699770-146700519)
               

               
               1-512, gnl|rn3|chr18 (57023428-57022761)
               


               
               743-1025, gnl|bosTau2|chr7 (38812323-38812042)
               

               
               743-1025, gnl|Hg17|chr5 (149579561-149579253)
               

               
               743-1025, gnl|Mm7|chr18 (61377104-61377433)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               nms (0.641574)
               

               
               sme (0.305437)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.641574)
               

               
               sme (0.305437)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	1-253, - strand, RNAz p=0.995607
	259-512, - strand, RNAz p=0.999997

	1-512, gnl\|bosTau2\|chr7 (38813132-38812622)
	1-512, gnl\|canFam2\|chr4 (62068861-62068095)
	1-512, gnl\|hg17\|chr5 (149579711-149580459)
	1-512, gnl\|Hg17\|chr5 (149580417-149579910)
	1-512, gnl\|loxAfr1\|scaffold_44328 (1437-582)
	1-512, gnl\|mm7\|chr18 (61376992-61376320)
	1-512, gnl\|oryCun1\|scaffold_90209 (7138-7670)
	1-512, gnl\|panTro1\|chr4 (156488242-156488989)
	1-512, gnl\|rheMac2\|chr6 (146699770-146700519)
	1-512, gnl\|rn3\|chr18 (57023428-57022761)

	743-1025, gnl\|bosTau2\|chr7 (38812323-38812042)
	743-1025, gnl\|Hg17\|chr5 (149579561-149579253)
	743-1025, gnl\|Mm7\|chr18 (61377104-61377433)

	nms (0.641574)
	sme (0.305437)
	fcc (0.197785)
	nep (0.183925)
	ton (0.1755)
	fhi (0.169578)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	ese (0.126502)
	ldo (0.0970026)