Non-Coding RNA Search

Ss1.1-rhlv10b_n13.5

Sequence:


               
               AAAGGCCAGGGCTGCAGTCCTGTCCTTTGGGTCAGTGTCGCCTCCAGGATACAGACGCCC
CTTCCAGCACAGCCCAGCCAGGCCCCCCACGCCGCCACCATGCCGTTCGGTAACACCCAC
AACAAGTACAAACTGAACTTCAAGGCTGAGGAGGAATACCCAGACCTCAGCAAGCACAAC
AACCACATGGCCAAGGCGCTGACCCTTGAGATCTACAAGAAGCTGCGGGACAAGGAGACT
CCATCTGGCTTCACCCTGGACGATGTCATCCAGACAGGTGTGGACAATCCAGGTCACCCC
TTCATCATGACCGTGGGCTGTGTGGCCGGTGACGAGGAGTCCTACGTGGTTTTCAAGGAT
CTCTTCGACCCCATCATCCAAGACCGACACGGGGGCTACAAACCCACCGACAAGCACAAG
ACCGACCTCAACCACGAGAACCTCAAGGGTGGAGACGACCTGGACCCCAACTACGTGCTC
AGCAGCCGCGTCCGCACTGGCCGCAGCATCAAGGGCTACACCCTGCCCCCTCACTGCTCC
CGCGGCGAGCGCCGGGCGGTGGAGAAACTCTCGGTGGAAGCCCTCAACAGCCTGACGGGA
GAGTTCAAGGGGAAATACTACCCTCTGAAGAGCATGACCGAGCAGGAGCAGCAACAGCTC
ATCGACGACCACTTCCTGTTTGACAAGCCCGTGTCCCCACTGCTGCTGGCCTCAGGCATG
GCCCGAGACTGGCCCGACGCGCGAGGCATCTGGCACAATGACAACAAGAGCTTCCTAGTG
TGGGTGAACGAGGAGGACCACCTCCGAGTCATCTCCATGGAGAAAGGAGGCAACATGAAG
GAGGTTTTCCGCCGCTTCTGCGTGGGGCTGCAGAAGATTGAGGAGATCTTCAAGAAAGCC
GGCCACCCCTTCATGTGGAACGAGCACCTGGGCTACGTGCTCACCTGCCCGTCTAACCTG
GGCACCGGGCTGCGTGGAGGCGTGCATGTGAAGCTGGCACACCTGAGCAAGCATCCCAAG
TTCGAGGAGATTCTCACTCGTCTGCGCCTGCAGAAGCGGGGCACAGGTGGCGTGGACACA
GCCGCTGTGGGCTCAGTGTTCGATGTATCCAACGCCGATCGGCTGGGCTCGTCGGAGGTA
GAACAGGTGCAGCTGGTGGTGGATGGTGTGAAGCTCATGGTGGAGATGGAGAAGAAGCTG
GAAAAAGGCCAGTCCATCGACGACATGATCCCCGCCCAGAAGTAGGCTCCCAGCCGACTG
CTGGAGCCCAGGGCAAAGGGAGGACCAAGCCCATCGAAGGCCCGCCCCTTCCTTCCAGAA
TCTGGCTGACAAGGGTCAGTCAACCCGGGGCTCTCTCCCCACTCTTCATCGAATTCCAGT
TCCAACCAGAGTTCCAGCCAATGGGCTCCATTCTCTGGGTTCTGGCCAATGAAAACCCTC
CCTTCACATTCACCTTTCATTATCCCTGAGCTCCGCCCACCACCAGGAGCTCTGGTTAAC
AGAGGCTCCCTGACACATTTGGAGCTCATGCTTTTCTCCACTCAAAGCAACAAATAAAAG
CAATGGTGGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGACCTCGAAGCCGCCATGCCTCTCTAGCCATGTCCTAGGGCTAGGCAT
ATTTATCCCTTCTCTAGAATGAGGCACAGTTACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGCCAGGGCTGCAGTCCTGTCCTTTGGGTCAGTGTCGCCTCCAGGATACAGACGCCC
CTTCCAGCACAGCCCAGCCAGGCCCCCCACGCCGCCACCATGCCGTTCGGTAACACCCAC
AACAAGTACAAACTGAACTTCAAGGCTGAGGAGGAATACCCAGACCTCAGCAAGCACAAC
AACCACATGGCCAAGGCGCTGACCCTTGAGATCTACAAGAAGCTGCGGGACAAGGAGACT
CCATCTGGCTTCACCCTGGACGATGTCATCCAGACAGGTGTGGACAATCCAGGTCACCCC
TTCATCATGACCGTGGGCTGTGTGGCCGGTGACGAGGAGTCCTACGTGGTTTTCAAGGAT
CTCTTCGACCCCATCATCCAAGACCGACACGGGGGCTACAAACCCACCGACAAGCACAAG
ACCGACCTCAACCACGAGAACCTCAAGGGTGGAGACGACCTGGACCCCAACTACGTGCTC
AGCAGCCGCGTCCGCACTGGCCGCAGCATCAAGGGCTACACCCTGCCCCCTCACTGCTCC
CGCGGCGAGCGCCGGGCGGTGGAGAAACTCTCGGTGGAAGCCCTCAACAGCCTGACGGGA
GAGTTCAAGGGGAAATACTACCCTCTGAAGAGCATGACCGAGCAGGAGCAGCAACAGCTC
ATCGACGACCACTTCCTGTTTGACAAGCCCGTGTCCCCACTGCTGCTGGCCTCAGGCATG
GCCCGAGACTGGCCCGACGCGCGAGGCATCTGGCACAATGACAACAAGAGCTTCCTAGTG
TGGGTGAACGAGGAGGACCACCTCCGAGTCATCTCCATGGAGAAAGGAGGCAACATGAAG
GAGGTTTTCCGCCGCTTCTGCGTGGGGCTGCAGAAGATTGAGGAGATCTTCAAGAAAGCC
GGCCACCCCTTCATGTGGAACGAGCACCTGGGCTACGTGCTCACCTGCCCGTCTAACCTG
GGCACCGGGCTGCGTGGAGGCGTGCATGTGAAGCTGGCACACCTGAGCAAGCATCCCAAG
TTCGAGGAGATTCTCACTCGTCTGCGCCTGCAGAAGCGGGGCACAGGTGGCGTGGACACA
GCCGCTGTGGGCTCAGTGTTCGATGTATCCAACGCCGATCGGCTGGGCTCGTCGGAGGTA
GAACAGGTGCAGCTGGTGGTGGATGGTGTGAAGCTCATGGTGGAGATGGAGAAGAAGCTG
GAAAAAGGCCAGTCCATCGACGACATGATCCCCGCCCAGAAGTAGGCTCCCAGCCGACTG
CTGGAGCCCAGGGCAAAGGGAGGACCAAGCCCATCGAAGGCCCGCCCCTTCCTTCCAGAA
TCTGGCTGACAAGGGTCAGTCAACCCGGGGCTCTCTCCCCACTCTTCATCGAATTCCAGT
TCCAACCAGAGTTCCAGCCAATGGGCTCCATTCTCTGGGTTCTGGCCAATGAAAACCCTC
CCTTCACATTCACCTTTCATTATCCCTGAGCTCCGCCCACCACCAGGAGCTCTGGTTAAC
AGAGGCTCCCTGACACATTTGGAGCTCATGCTTTTCTCCACTCAAAGCAACAAATAAAAG
CAATGGTGGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGACCTCGAAGCCGCCATGCCTCTCTAGCCATGTCCTAGGGCTAGGCAT
ATTTATCCCTTCTCTAGAATGAGGCACAGTTACCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               KCRM_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               KCRM_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               94-1574, - strand, RNAz p=0.999998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-1574, - strand, RNAz p=0.999998

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               58-331, gnl|bosTau2|chr18 (38536418-38536696)
               

               
               58-331, gnl|Hg17|chr19 (50514852-50514584)
               

               
               58-331, gnl|Mm7|chr7 (17096481-17096712)
               


               
               579-753, gnl|bosTau2|chr18 (38541252-38541426)
               

               
               579-753, gnl|Hg17|chr19 (50507020-50506846)
               

               
               579-753, gnl|Mm7|chr7 (17099092-17099265)
               


               
               1064-1574, gnl|bosTau2|chr18 (38543906-38544435)
               

               
               1064-1574, gnl|Hg17|chr19 (50502029-50501511)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-331, gnl|bosTau2|chr18 (38536418-38536696)
               

               
               58-331, gnl|Hg17|chr19 (50514852-50514584)
               

               
               58-331, gnl|Mm7|chr7 (17096481-17096712)
               


               
               579-753, gnl|bosTau2|chr18 (38541252-38541426)
               

               
               579-753, gnl|Hg17|chr19 (50507020-50506846)
               

               
               579-753, gnl|Mm7|chr7 (17099092-17099265)
               


               
               1064-1574, gnl|bosTau2|chr18 (38543906-38544435)
               

               
               1064-1574, gnl|Hg17|chr19 (50502029-50501511)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               mas (36.8034)
               

               
               hlv (13.3686)
               

               
               nms (13.2592)
               

               
               ton (7.89751)
               

               
               ctl (6.4289)
               

               
               ssp (3.79455)
               

               
               nep (3.6785)
               

               
               ldo (3.10408)
               

               
               ese (2.78305)
               

               
               ste (1.89292)
               

               
               jca (1.25356)
               

               
               hea (1.22699)
               

               
               col (0.975039)
               

               
               tbr (0.925069)
               

               
               nca (0.821243)
               

               
               che (0.817884)
               

               
               sme (0.610874)
               

               
               eru (0.480192)
               

               
               eye (0.341006)
               

               
               pty (0.142714)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (36.8034)
               

               
               hlv (13.3686)
               

               
               nms (13.2592)
               

               
               ton (7.89751)
               

               
               ctl (6.4289)
               

               
               ssp (3.79455)
               

               
               nep (3.6785)
               

               
               ldo (3.10408)
               

               
               ese (2.78305)
               

               
               ste (1.89292)
               

               
               jca (1.25356)
               

               
               hea (1.22699)
               

               
               col (0.975039)
               

               
               tbr (0.925069)
               

               
               nca (0.821243)
               

               
               che (0.817884)
               

               
               sme (0.610874)
               

               
               eru (0.480192)
               

               
               eye (0.341006)
               

               
               pty (0.142714)

	58-331, gnl\|bosTau2\|chr18 (38536418-38536696)
	58-331, gnl\|Hg17\|chr19 (50514852-50514584)
	58-331, gnl\|Mm7\|chr7 (17096481-17096712)

	579-753, gnl\|bosTau2\|chr18 (38541252-38541426)
	579-753, gnl\|Hg17\|chr19 (50507020-50506846)
	579-753, gnl\|Mm7\|chr7 (17099092-17099265)

	1064-1574, gnl\|bosTau2\|chr18 (38543906-38544435)
	1064-1574, gnl\|Hg17\|chr19 (50502029-50501511)

	mas (36.8034)
	hlv (13.3686)
	nms (13.2592)
	ton (7.89751)
	ctl (6.4289)
	ssp (3.79455)
	nep (3.6785)
	ldo (3.10408)
	ese (2.78305)
	ste (1.89292)
	jca (1.25356)
	hea (1.22699)
	col (0.975039)
	tbr (0.925069)
	nca (0.821243)
	che (0.817884)
	sme (0.610874)
	eru (0.480192)
	eye (0.341006)
	pty (0.142714)