Non-Coding RNA Search

Ss1.1-rhlv11b_j22.5

Sequence:


               
               GGGGGAAGCAGAAAAGGGCAGAGTCAGAATGAGCTGGGGAAGAGACAGATGTTAAGAAGC
AGCGATGGAGAAATGGTGCTAGTGGTCCAGCCACCGGAGACAGTCACCTGGGACATCTTT
TCAAGTAGCGGCTGTGCCGGGCACGGTAAGACAGTCTCAGAGCAGCATCTTCCTCCTGCC
CACCCAACTGAGAACTGGAGTTTGTATTGCAGGTGCCTCCTTCTAGGACTGGGCTGAAGC
CTCAGGAGACCCAGCTGCTAACATCTGGGGGCGGGATCATGTCTAACAAAGGCTGGTGGG
CACCACCCGAGGGCGAGGACAGCGTGTCTGAGAAGCTCCTGAGAAAGACCAGGGAGTCTC
CGCTGGTGCCTGTAGGCTTAGGGGGCTGCCTGGTGGTGGCAGCATACAGGATCTACCGGC
TGAAGGCTCGCGGTTCCACCAAGATGTCTATACACCTGATTCACACCCGAGTGGCAGCGC
AGGCCTGTGCTGTGGGTGCGATCATGCTGGGCGCTGTGTATACAATGTACAGAGACTACT
GCAAGAGAGCAGCGCAGGACGCCGGGGAGAAGTAGGATTCCTCCCTGCAGGGCCCGGGGC
AGCTGGAAGCTCTTCCATCAAGCCCTGGTATGCACCTAATAAAGTGGTTTTGAGGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAAGCAGAAAAGGGCAGAGTCAGAATGAGCTGGGGAAGAGACAGATGTTAAGAAGC
AGCGATGGAGAAATGGTGCTAGTGGTCCAGCCACCGGAGACAGTCACCTGGGACATCTTT
TCAAGTAGCGGCTGTGCCGGGCACGGTAAGACAGTCTCAGAGCAGCATCTTCCTCCTGCC
CACCCAACTGAGAACTGGAGTTTGTATTGCAGGTGCCTCCTTCTAGGACTGGGCTGAAGC
CTCAGGAGACCCAGCTGCTAACATCTGGGGGCGGGATCATGTCTAACAAAGGCTGGTGGG
CACCACCCGAGGGCGAGGACAGCGTGTCTGAGAAGCTCCTGAGAAAGACCAGGGAGTCTC
CGCTGGTGCCTGTAGGCTTAGGGGGCTGCCTGGTGGTGGCAGCATACAGGATCTACCGGC
TGAAGGCTCGCGGTTCCACCAAGATGTCTATACACCTGATTCACACCCGAGTGGCAGCGC
AGGCCTGTGCTGTGGGTGCGATCATGCTGGGCGCTGTGTATACAATGTACAGAGACTACT
GCAAGAGAGCAGCGCAGGACGCCGGGGAGAAGTAGGATTCCTCCCTGCAGGGCCCGGGGC
AGCTGGAAGCTCTTCCATCAAGCCCTGGTATGCACCTAATAAAGTGGTTTTGAGGCAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9P297_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9P297_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               288-385, - strand, RNAz p=0.983364

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-385, - strand, RNAz p=0.983364

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-385, gnl|bosTau2|chr19 (37449590-37449202)
               

               
               1-385, gnl|canFam2|chr9 (21950009-21949415)
               

               
               1-385, gnl|dasNov1|scaffold_11809 (39527-40113)
               

               
               1-385, gnl|echTel1|scaffold_313504 (116-661)
               

               
               1-385, gnl|hg17|chr17 (40280714-40281292)
               

               
               1-385, gnl|Hg17|chr17 (40280759-40281153)
               

               
               1-385, gnl|loxAfr1|scaffold_17657 (20936-20349)
               

               
               1-385, gnl|mm7|chr11 (102945408-102945931)
               

               
               1-385, gnl|Mm7|chr11 (102945452-102945812)
               

               
               1-385, gnl|monDom2|scaffold_18 (41744888-41744281)
               

               
               1-385, gnl|oryCun1|scaffold_201368 (12693-12192)
               

               
               1-385, gnl|panTro1|chr19 (43555233-43555811)
               

               
               1-385, gnl|rheMac2|chr16 (54945840-54946422)
               

               
               1-385, gnl|rn3|chr10 (92024400-92024926)
               


               
               510-658, gnl|bosTau2|chr19 (37447797-37447656)
               

               
               510-658, gnl|Hg17|chr17 (40283225-40283369)
               

               
               510-658, gnl|Mm7|chr11 (102946948-102947081)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-385, gnl|bosTau2|chr19 (37449590-37449202)
               

               
               1-385, gnl|canFam2|chr9 (21950009-21949415)
               

               
               1-385, gnl|dasNov1|scaffold_11809 (39527-40113)
               

               
               1-385, gnl|echTel1|scaffold_313504 (116-661)
               

               
               1-385, gnl|hg17|chr17 (40280714-40281292)
               

               
               1-385, gnl|Hg17|chr17 (40280759-40281153)
               

               
               1-385, gnl|loxAfr1|scaffold_17657 (20936-20349)
               

               
               1-385, gnl|mm7|chr11 (102945408-102945931)
               

               
               1-385, gnl|Mm7|chr11 (102945452-102945812)
               

               
               1-385, gnl|monDom2|scaffold_18 (41744888-41744281)
               

               
               1-385, gnl|oryCun1|scaffold_201368 (12693-12192)
               

               
               1-385, gnl|panTro1|chr19 (43555233-43555811)
               

               
               1-385, gnl|rheMac2|chr16 (54945840-54946422)
               

               
               1-385, gnl|rn3|chr10 (92024400-92024926)
               


               
               510-658, gnl|bosTau2|chr19 (37447797-37447656)
               

               
               510-658, gnl|Hg17|chr17 (40283225-40283369)
               

               
               510-658, gnl|Mm7|chr11 (102946948-102947081)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               cly (0.120642)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               cly (0.120642)

	1-385, gnl\|bosTau2\|chr19 (37449590-37449202)
	1-385, gnl\|canFam2\|chr9 (21950009-21949415)
	1-385, gnl\|dasNov1\|scaffold_11809 (39527-40113)
	1-385, gnl\|echTel1\|scaffold_313504 (116-661)
	1-385, gnl\|hg17\|chr17 (40280714-40281292)
	1-385, gnl\|Hg17\|chr17 (40280759-40281153)
	1-385, gnl\|loxAfr1\|scaffold_17657 (20936-20349)
	1-385, gnl\|mm7\|chr11 (102945408-102945931)
	1-385, gnl\|Mm7\|chr11 (102945452-102945812)
	1-385, gnl\|monDom2\|scaffold_18 (41744888-41744281)
	1-385, gnl\|oryCun1\|scaffold_201368 (12693-12192)
	1-385, gnl\|panTro1\|chr19 (43555233-43555811)
	1-385, gnl\|rheMac2\|chr16 (54945840-54946422)
	1-385, gnl\|rn3\|chr10 (92024400-92024926)

	510-658, gnl\|bosTau2\|chr19 (37447797-37447656)
	510-658, gnl\|Hg17\|chr17 (40283225-40283369)
	510-658, gnl\|Mm7\|chr11 (102946948-102947081)

	ski (0.146735)
	lnt (0.142308)
	hlv (0.139256)
	ret (0.128733)
	cly (0.120642)