Non-Coding RNA Search

Ss1.1-rhlv12b_c9.5

Sequence:


               
               ACGCAGCGGACGAATCCTTCCGAAGAAGACTCATTGCAAATCTGGCTGAGCACATTCTCT
TCACGGCTAGCAAGTCTTGTGCCATTATGTCAACCCATATCGTGGCCTGCCTGCTCCTCT
ACAGACACAGGCAGGGAATTGATCTCTCCACGTTGGTGGAAGACTTCTTTGTGATGAAGG
AGGAAGTCCTGGCTCGTGATTTTGACCTGGGTTTCTCAGGAAATTCAGAAGATGTAGTCA
TGCATGCCATACAGCTGCTGGGAAACTGCATCACGATCACCCACACCAGCAGGAATGATG
AGTTTTTTATTACTCCCAGCACAACGGTCCCGTCAGTCTTTGAACTCAGCTGCTACAGCA
ATGGGGTACTCCACGTCTTTATCATGGAGGCCATCATAGCCTGCAGCCTCTATGCAGTTC
TGAAGAAGAGGGGCTCAGGAGGGCCTGCGTCTCCCAGCCTGATCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCAGCGGACGAATCCTTCCGAAGAAGACTCATTGCAAATCTGGCTGAGCACATTCTCT
TCACGGCTAGCAAGTCTTGTGCCATTATGTCAACCCATATCGTGGCCTGCCTGCTCCTCT
ACAGACACAGGCAGGGAATTGATCTCTCCACGTTGGTGGAAGACTTCTTTGTGATGAAGG
AGGAAGTCCTGGCTCGTGATTTTGACCTGGGTTTCTCAGGAAATTCAGAAGATGTAGTCA
TGCATGCCATACAGCTGCTGGGAAACTGCATCACGATCACCCACACCAGCAGGAATGATG
AGTTTTTTATTACTCCCAGCACAACGGTCCCGTCAGTCTTTGAACTCAGCTGCTACAGCA
ATGGGGTACTCCACGTCTTTATCATGGAGGCCATCATAGCCTGCAGCCTCTATGCAGTTC
TGAAGAAGAGGGGCTCAGGAGGGCCTGCGTCTCCCAGCCTGATCAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32250429|gb|AAP74373.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32250429|gb|AAP74373.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               133-252, + strand, RNAz p=0.506577

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-252, + strand, RNAz p=0.506577

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               133-399, gnl|bosTau2|chr26 (20993840-20993574)
               

               
               133-399, gnl|Hg17|chr10 (113910617-113910352)
               

               
               133-399, gnl|Mm7|chr19 (54992823-54992557)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-399, gnl|bosTau2|chr26 (20993840-20993574)
               

               
               133-399, gnl|Hg17|chr10 (113910617-113910352)
               

               
               133-399, gnl|Mm7|chr19 (54992823-54992557)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	133-399, gnl\|bosTau2\|chr26 (20993840-20993574)
	133-399, gnl\|Hg17\|chr10 (113910617-113910352)
	133-399, gnl\|Mm7\|chr19 (54992823-54992557)