Ss1.1-rhlv13b_e20.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACGCCAGGCTCTAGGCACCAGTCCGCTTATTCGCTCCGCACGCCCGTCCGCGCCCGCC ATGGCCTCCATCCAGCAGCTGGTCGGAAGATGGCGCTTAGTGGAGAGCAAAGGCTTTGAC GAGTACATGAAGGAAGTAGGAGTGGGAATGGCCCTACGAAAAATGGGTGCAATGGCCAAA CCAGATTGTATCATCACTTTTGATGGCAAAGACCTCACCATCAAAACGGAGAGCACTTTG AAAACCACACAGTTTTCCTGTAACCTGGGACAGAAGTTTGAAGAGACTACAGCTGATGGC AGAAAAACTCAGACTGTCTGCGACTTTACCAATGGAGAATTGGTTCAACATCAAGAATGG GACGGGAAGGAGAGCACAATCACAAGAAAAGTGGAAAATGGGAAATTAGTGGTGGTATGC GTCATGAACAATGTCACCTGCACTCGGGTCTATGAAAAAGTAGAGTGAAAATTCCCTCAT CATTTGGGATAGGAATTAGTTGTGAGGATGAACAAGCTCAGTTCAATGAGCAAATCTCCA TACTGCTTTTTTTCATTACTATATTCAATTATCTTTATCAAAAACATTTTACTTTAACTA TTTCAAAGTGTTGGCTTAATAGGATCATCGCTTTGGTTAGTAAATAAATCAGTTTGTGCT ATAAAAAAAAAATATGCTTTTTTAACTTTATGGAAATTAGTGGTGAATTTTAGCATTTAC AAATTGAGTAAATTCTGGGGTAGCCTTGAAGTACCATATTGAGATTATATTTTAGTAATT TATATAGAGAGCTACTTCTGTGGCAAATATGATACCAAATTATTGCCCTATGTTATTTGA ACTTTATATCAACTCAAGAATCTTAAATTTCTGGCTGAGACTATTCTCATTAAAAAATAG CTATATAAACTTTATAATTTAAATATTAGAATAAAGATTAAATTACCGTCATTGACTAGT GGTCAAACTTTTAATGACATGCTTTAGATATTATTCAGGAATTCTGCACCCAAAAGTTCA TTTAATAAACTTTCTGAGGACTTACTATGTGCCAGGCAGTCCTCCAGAGGTTGAGGTATG TCTGAACACAAGGACAAATCATTGCCTTCACTGGGATGAGAAACACTCAGCTTTGGAAGA ACACAATGGGCTCATTAACAAATGCCATAAAAGTAAATAGCTCCAAAACTCTTGCATGTA TATATAAAGAATAACTAGATTTCTAATGACTCCTGTCCTATTTCTCAAACACAGATAACA AATATCTGCAATTCACCTTGGAAGAAATTCCTGTAGGCACTGGGCTAAAACCATGTACCT GATTCTCAGAGCAATACTTAGAGGTGCTAGTACTATTACCTCTATTCTGTAAATAAGAAA ACAGGCTTTGGACTAGCTAATATGTTAAGGACATAGGAAGTAGAGTCAGAGTGGGAAACT ACATCTTGAGTCCACTCGTGACTGATGAATCATTCTACAACACTGCCTCAGCTTATATAA GGATCTGGAGTCTGAAGTCTGTAAATGTCATTGAGACTTTTCTGAAACCACCTTCCATGC ACTGAAGTGTTAACTGGTAAGAATCATAAGAATCACTGAAAGATAATAGTGAAAGTGTCA CTGACACTCTAGCCTTGTACTGTCTTAAAACACAGCCACATGTGGCTACTGAGTACTAGA AATGTGCCTGAAGTGAATTGAGGGGTGCGGCAAGTAAAACACATGTCAAATTTAAAGGAC TTGATACCAAAAACAAAAAAAGGAAAATGCCTCTAATTTTTTTAAAAAACATATTGGTTA CATGTTGAAATAACACTTTTGGATATAGTTGGTTACAGAAATATTGTATATTAATAAACT TAATTTTACCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACGCCAGGCTCTAGGCACCAGTCCGCTTATTCGCTCCGCACGCCCGTCCGCGCCCGCC ATGGCCTCCATCCAGCAGCTGGTCGGAAGATGGCGCTTAGTGGAGAGCAAAGGCTTTGAC GAGTACATGAAGGAAGTAGGAGTGGGAATGGCCCTACGAAAAATGGGTGCAATGGCCAAA CCAGATTGTATCATCACTTTTGATGGCAAAGACCTCACCATCAAAACGGAGAGCACTTTG AAAACCACACAGTTTTCCTGTAACCTGGGACAGAAGTTTGAAGAGACTACAGCTGATGGC AGAAAAACTCAGACTGTCTGCGACTTTACCAATGGAGAATTGGTTCAACATCAAGAATGG GACGGGAAGGAGAGCACAATCACAAGAAAAGTGGAAAATGGGAAATTAGTGGTGGTATGC GTCATGAACAATGTCACCTGCACTCGGGTCTATGAAAAAGTAGAGTGAAAATTCCCTCAT CATTTGGGATAGGAATTAGTTGTGAGGATGAACAAGCTCAGTTCAATGAGCAAATCTCCA TACTGCTTTTTTTCATTACTATATTCAATTATCTTTATCAAAAACATTTTACTTTAACTA TTTCAAAGTGTTGGCTTAATAGGATCATCGCTTTGGTTAGTAAATAAATCAGTTTGTGCT ATAAAAAAAAAATATGCTTTTTTAACTTTATGGAAATTAGTGGTGAATTTTAGCATTTAC AAATTGAGTAAATTCTGGGGTAGCCTTGAAGTACCATATTGAGATTATATTTTAGTAATT TATATAGAGAGCTACTTCTGTGGCAAATATGATACCAAATTATTGCCCTATGTTATTTGA ACTTTATATCAACTCAAGAATCTTAAATTTCTGGCTGAGACTATTCTCATTAAAAAATAG CTATATAAACTTTATAATTTAAATATTAGAATAAAGATTAAATTACCGTCATTGACTAGT GGTCAAACTTTTAATGACATGCTTTAGATATTATTCAGGAATTCTGCACCCAAAAGTTCA TTTAATAAACTTTCTGAGGACTTACTATGTGCCAGGCAGTCCTCCAGAGGTTGAGGTATG TCTGAACACAAGGACAAATCATTGCCTTCACTGGGATGAGAAACACTCAGCTTTGGAAGA ACACAATGGGCTCATTAACAAATGCCATAAAAGTAAATAGCTCCAAAACTCTTGCATGTA TATATAAAGAATAACTAGATTTCTAATGACTCCTGTCCTATTTCTCAAACACAGATAACA AATATCTGCAATTCACCTTGGAAGAAATTCCTGTAGGCACTGGGCTAAAACCATGTACCT GATTCTCAGAGCAATACTTAGAGGTGCTAGTACTATTACCTCTATTCTGTAAATAAGAAA ACAGGCTTTGGACTAGCTAATATGTTAAGGACATAGGAAGTAGAGTCAGAGTGGGAAACT ACATCTTGAGTCCACTCGTGACTGATGAATCATTCTACAACACTGCCTCAGCTTATATAA GGATCTGGAGTCTGAAGTCTGTAAATGTCATTGAGACTTTTCTGAAACCACCTTCCATGC ACTGAAGTGTTAACTGGTAAGAATCATAAGAATCACTGAAAGATAATAGTGAAAGTGTCA CTGACACTCTAGCCTTGTACTGTCTTAAAACACAGCCACATGTGGCTACTGAGTACTAGA AATGTGCCTGAAGTGAATTGAGGGGTGCGGCAAGTAAAACACATGTCAAATTTAAAGGAC TTGATACCAAAAACAAAAAAAGGAAAATGCCTCTAATTTTTTTAAAAAACATATTGGTTA CATGTTGAAATAACACTTTTGGATATAGTTGGTTACAGAAATATTGTATATTAATAAACT TAATTTTACCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 453-558, - strand, RNAz p=0.718348 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 453-558, - strand, RNAz p=0.718348 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 41-140, gnl|bosTau2|chr14 (25506893-25506996) | |
| 41-140, gnl|canFam2|chr1 (40483880-40483969) | |
| 41-140, gnl|dasNov1|scaffold_97235 (3946-4042) | |
| 41-140, gnl|echTel1|scaffold_103792 (580-483) | |
| 41-140, gnl|hg17|chr5 (95334845-95334931) | |
| 41-140, gnl|Hg17|chr8 (82355362-82355465) | |
| 41-140, gnl|loxAfr1|scaffold_1103 (37790-37866) | |
| 41-140, gnl|Mm7|chr3 (10018282-10018386) | |
| 41-140, gnl|mm7|chr8 (33068972-33069056) | |
| 41-140, gnl|monDom2|scaffold_5 (94309855-94309784) | |
| 41-140, gnl|oryCun1|scaffold_208368 (124631-124737) | |
| 41-140, gnl|panTro1|chr4 (19834129-19834043) | |
| 41-140, gnl|rheMac2|chr6 (92188948-92189034) | |
| 41-140, gnl|rn3|chr3 (30998034-30998095) | |
| 212-312, gnl|bosTau2|chr14 (25509528-25509628) | |
| 212-312, gnl|canFam2|chrX (35036877-35036806) | |
| 212-312, gnl|canFam2|chrX (35036877-35036806) | |
| 212-312, gnl|danRer3|chr3 (30432806-30432735) | |
| 212-312, gnl|danRer3|chr3 (30432806-30432735) | |
| 212-312, gnl|dasNov1|scaffold_97235 (3757-3828) | |
| 212-312, gnl|dasNov1|scaffold_97235 (3757-3828) | |
| 212-312, gnl|echTel1|scaffold_103792 (762-698) | |
| 212-312, gnl|echTel1|scaffold_323705 (44397-44467) | |
| 212-312, gnl|fr1|chrUn (65609877-65609941) | |
| 212-312, gnl|fr1|chrUn (65609877-65609941) | |
| 212-312, gnl|hg17|chr11 (59305519-59305590) | |
| 212-312, gnl|hg17|chr22 (15450684-15450755) | |
| 212-312, gnl|Hg17|chr8 (82358228-82358328) | |
| 212-312, gnl|loxAfr1|scaffold_1103 (37487-37558) | |
| 212-312, gnl|loxAfr1|scaffold_1103 (37487-37558) | |
| 212-312, gnl|mm7|chr18 (74697947-74698018) | |
| 212-312, gnl|Mm7|chr3 (10020710-10020810) | |
| 212-312, gnl|mm7|chr9 (57511881-57511810) | |
| 212-312, gnl|monDom2|scaffold_27 (34140694-34140765) | |
| 212-312, gnl|monDom2|scaffold_27 (34140694-34140765) | |
| 212-312, gnl|oryCun1|scaffold_208368 (122029-122100) | |
| 212-312, gnl|oryCun1|scaffold_208368 (122029-122100) | |
| 212-312, gnl|panTro1|chr14 (55121943-55122014) | |
| 212-312, gnl|panTro1|chr23 (15421915-15421986) | |
| 212-312, gnl|rheMac2|chr7 (63487203-63487274) | |
| 212-312, gnl|rheMac2|chr7 (63487203-63487274) | |
| 212-312, gnl|rn3|chr3 (30997844-30997915) | |
| 212-312, gnl|rn3|chr3 (30997844-30997915) | |
| 212-312, gnl|tetNig1|chrUn_random (90004032-90004096) | |
| 212-312, gnl|tetNig1|chrUn_random (90004032-90004096) | |
| 414-1613, gnl|bosTau2|chr14 (25510768-25511971) | |
| 414-1613, gnl|Mm7|chr3 (10021733-10022826) | |
| 494-672, gnl|bosTau2|chr11 (12853615-12853437) | |
| 494-672, gnl|Hg17|chr13 (72572691-72572500) | |
| 494-672, gnl|Mm7|chr2 (119618851-119618652) | |
| 1709-1871, gnl|bosTau2|chr14 (25512037-25512184) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-140, gnl|bosTau2|chr14 (25506893-25506996) | |
| 41-140, gnl|canFam2|chr1 (40483880-40483969) | |
| 41-140, gnl|dasNov1|scaffold_97235 (3946-4042) | |
| 41-140, gnl|echTel1|scaffold_103792 (580-483) | |
| 41-140, gnl|hg17|chr5 (95334845-95334931) | |
| 41-140, gnl|Hg17|chr8 (82355362-82355465) | |
| 41-140, gnl|loxAfr1|scaffold_1103 (37790-37866) | |
| 41-140, gnl|Mm7|chr3 (10018282-10018386) | |
| 41-140, gnl|mm7|chr8 (33068972-33069056) | |
| 41-140, gnl|monDom2|scaffold_5 (94309855-94309784) | |
| 41-140, gnl|oryCun1|scaffold_208368 (124631-124737) | |
| 41-140, gnl|panTro1|chr4 (19834129-19834043) | |
| 41-140, gnl|rheMac2|chr6 (92188948-92189034) | |
| 41-140, gnl|rn3|chr3 (30998034-30998095) | |
| 212-312, gnl|bosTau2|chr14 (25509528-25509628) | |
| 212-312, gnl|canFam2|chrX (35036877-35036806) | |
| 212-312, gnl|canFam2|chrX (35036877-35036806) | |
| 212-312, gnl|danRer3|chr3 (30432806-30432735) | |
| 212-312, gnl|danRer3|chr3 (30432806-30432735) | |
| 212-312, gnl|dasNov1|scaffold_97235 (3757-3828) | |
| 212-312, gnl|dasNov1|scaffold_97235 (3757-3828) | |
| 212-312, gnl|echTel1|scaffold_103792 (762-698) | |
| 212-312, gnl|echTel1|scaffold_323705 (44397-44467) | |
| 212-312, gnl|fr1|chrUn (65609877-65609941) | |
| 212-312, gnl|fr1|chrUn (65609877-65609941) | |
| 212-312, gnl|hg17|chr11 (59305519-59305590) | |
| 212-312, gnl|hg17|chr22 (15450684-15450755) | |
| 212-312, gnl|Hg17|chr8 (82358228-82358328) | |
| 212-312, gnl|loxAfr1|scaffold_1103 (37487-37558) | |
| 212-312, gnl|loxAfr1|scaffold_1103 (37487-37558) | |
| 212-312, gnl|mm7|chr18 (74697947-74698018) | |
| 212-312, gnl|Mm7|chr3 (10020710-10020810) | |
| 212-312, gnl|mm7|chr9 (57511881-57511810) | |
| 212-312, gnl|monDom2|scaffold_27 (34140694-34140765) | |
| 212-312, gnl|monDom2|scaffold_27 (34140694-34140765) | |
| 212-312, gnl|oryCun1|scaffold_208368 (122029-122100) | |
| 212-312, gnl|oryCun1|scaffold_208368 (122029-122100) | |
| 212-312, gnl|panTro1|chr14 (55121943-55122014) | |
| 212-312, gnl|panTro1|chr23 (15421915-15421986) | |
| 212-312, gnl|rheMac2|chr7 (63487203-63487274) | |
| 212-312, gnl|rheMac2|chr7 (63487203-63487274) | |
| 212-312, gnl|rn3|chr3 (30997844-30997915) | |
| 212-312, gnl|rn3|chr3 (30997844-30997915) | |
| 212-312, gnl|tetNig1|chrUn_random (90004032-90004096) | |
| 212-312, gnl|tetNig1|chrUn_random (90004032-90004096) | |
| 414-1613, gnl|bosTau2|chr14 (25510768-25511971) | |
| 414-1613, gnl|Mm7|chr3 (10021733-10022826) | |
| 494-672, gnl|bosTau2|chr11 (12853615-12853437) | |
| 494-672, gnl|Hg17|chr13 (72572691-72572500) | |
| 494-672, gnl|Mm7|chr2 (119618851-119618652) | |
| 1709-1871, gnl|bosTau2|chr14 (25512037-25512184) |
| Expressed library(ies): 64 entry(ies) | More info |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
| fat (3.2434) | |
| hea (2.86299) | |
| isp (2.70677) | |
| ski (2.64123) | |
| ssp (2.16832) | |
| vin (1.99534) | |
| csk (1.68895) | |
| mgp (1.61476) | |
| bfe (1.49858) | |
| ton (1.404) | |
| rec (1.38456) | |
| aor (1.36692) | |
| ste (1.35208) | |
| mga (1.28164) | |
| mgm (1.2624) | |
| sme (1.22175) | |
| cki (1.15664) | |
| bla (0.87043) | |
| hlv (0.835538) | |
| che (0.817884) | |
| ldo (0.776021) | |
| cbe (0.717703) | |
| cst (0.700182) | |
| lyg (0.665513) | |
| nje (0.66368) | |
| ret (0.643666) | |
| nms (0.641574) | |
| sug (0.636456) | |
| thg (0.633955) | |
| pgl (0.592417) | |
| lin (0.582411) | |
| sto (0.539471) | |
| sin (0.524843) | |
| mcp (0.511945) | |
| med (0.465008) | |
| tbr (0.462535) | |
| ute (0.398353) | |
| tra (0.369276) | |
| gul (0.355177) | |
| duo (0.345602) | |
| cte (0.29274) | |
| liv (0.292569) | |
| nca (0.273748) | |
| kid (0.259471) | |
| jca (0.22792) | |
| spc (0.226732) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| cut (0.169924) | |
| cje (0.165235) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (3.2434) | |
| hea (2.86299) | |
| isp (2.70677) | |
| ski (2.64123) | |
| ssp (2.16832) | |
| vin (1.99534) | |
| csk (1.68895) | |
| mgp (1.61476) | |
| bfe (1.49858) | |
| ton (1.404) | |
| rec (1.38456) | |
| aor (1.36692) | |
| ste (1.35208) | |
| mga (1.28164) | |
| mgm (1.2624) | |
| sme (1.22175) | |
| cki (1.15664) | |
| bla (0.87043) | |
| hlv (0.835538) | |
| che (0.817884) | |
| ldo (0.776021) | |
| cbe (0.717703) | |
| cst (0.700182) | |
| lyg (0.665513) | |
| nje (0.66368) | |
| ret (0.643666) | |
| nms (0.641574) | |
| sug (0.636456) | |
| thg (0.633955) | |
| pgl (0.592417) | |
| lin (0.582411) | |
| sto (0.539471) | |
| sin (0.524843) | |
| mcp (0.511945) | |
| med (0.465008) | |
| tbr (0.462535) | |
| ute (0.398353) | |
| tra (0.369276) | |
| gul (0.355177) | |
| duo (0.345602) | |
| cte (0.29274) | |
| liv (0.292569) | |
| nca (0.273748) | |
| kid (0.259471) | |
| jca (0.22792) | |
| spc (0.226732) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| cut (0.169924) | |
| cje (0.165235) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| nbm (0.0993246) |