Non-Coding RNA Search

Ss1.1-rhlv13b_i19.5

Sequence:


               
               TTTAAAAGTATTTTGCATTATTTGCAGTAGCATGTTATTGGCCCTGCTCAAAGGGCAGAT
TTTAAAAATTCAATTTGGGTGAAAGATTTGCTAGTTTTCCAGAAAGATTTGCTGTCTTAA
ACTCAACATTTTTTTTTTTTCCTATTTTCATGTGAATGACTGGGATGCTATCTAATAAAC
TCTTCCAAGGTCATGTTTGTGAAATAAACATCACATTGAGAGCTTTCCTGTCATCTACAC
TATGTGTGTTGTCTGGAGTGTTGAACAAATTTGAGTTCCTAAGTTGTACTCTATCCTTGT
ATGGTAAATAAGATTTCGAATGTGTGCCACTACAAACTGAGATGATAATGCTGTACAATT
TTAAATGGTAGCAGTTTCTGTATGCAGTAGGCTGAAATATTTTGATGAACTGCTTAATTT
TTGGATTTTATTTTTTAAGTTGTATAATTTATTTTCTTGCAAAATAAAAATGTAATATAA
AAGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAAGTATTTTGCATTATTTGCAGTAGCATGTTATTGGCCCTGCTCAAAGGGCAGAT
TTTAAAAATTCAATTTGGGTGAAAGATTTGCTAGTTTTCCAGAAAGATTTGCTGTCTTAA
ACTCAACATTTTTTTTTTTTCCTATTTTCATGTGAATGACTGGGATGCTATCTAATAAAC
TCTTCCAAGGTCATGTTTGTGAAATAAACATCACATTGAGAGCTTTCCTGTCATCTACAC
TATGTGTGTTGTCTGGAGTGTTGAACAAATTTGAGTTCCTAAGTTGTACTCTATCCTTGT
ATGGTAAATAAGATTTCGAATGTGTGCCACTACAAACTGAGATGATAATGCTGTACAATT
TTAAATGGTAGCAGTTTCTGTATGCAGTAGGCTGAAATATTTTGATGAACTGCTTAATTT
TTGGATTTTATTTTTTAAGTTGTATAATTTATTTTCTTGCAAAATAAAAATGTAATATAA
AAGCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-435, + strand, RNAz p=0.892254

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-435, + strand, RNAz p=0.892254

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-484, gnl|bosTau2|chr15 (5999603-5999124)
               

               
               1-484, gnl|Hg17|chr11 (107483221-107483700)
               

               
               1-484, gnl|Mm7|chr9 (53593771-53593336)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-484, gnl|bosTau2|chr15 (5999603-5999124)
               

               
               1-484, gnl|Hg17|chr11 (107483221-107483700)
               

               
               1-484, gnl|Mm7|chr9 (53593771-53593336)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               nbm (0.0993246)

	1-484, gnl\|bosTau2\|chr15 (5999603-5999124)
	1-484, gnl\|Hg17\|chr11 (107483221-107483700)
	1-484, gnl\|Mm7\|chr9 (53593771-53593336)