Ss1.1-rhlv13b_p22.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCAGTGTGACTCCAACGGGGACTGCACAGATGTGGATAGAATTGTAGGGGCGGGGCTG GGCACAGGTGCCATCATTGCCATCCTGCTCTGCATCATCATTCTGCTCATCCTTGTTCTC ATGTTTGTGGTATGGATGAAGCGCCGAGATAAAGAACGCCAGGCCAAGCAACTTTTAATT GATCCAGAAGATGATGTAAGAGATAATATTTTAAAATATGATGAAGAAGGTGGAGGAGAA GAAGACCAGGACTATGACTTGAGCCAGCTCCAGCAGCCTGATACTGTGGAACCAGATGCC ATCAAGCCTGTTGGAATCCGACGGTTGGATGAGAGACCCATCCATGCTGAGCCCCAGTAC CCGGTTCGATCTGCAGCCCCTCACCCTGGGGACATCGGGGACTTCATTAATGAGGGTCTT AAAGCTGCTGACAATGATCCCACAGCTCCGCCATATGACTCCCTTCTAGTCTTTGACTAT GAAGGCAGTGGCTCTACCGCTGGGTCCTTGAGCTCCCTTAATTCCTCCAGTAGTGGAGGT GAGCAGGACTATGACTACCTGAATGACTGGGGGCCACGTTTCAAGAAGCTCGCTGACATG TACGGTGGAGGTGATGACTGAACTTCAGGGTGAACTTGGTTTTGGGAAAAGTACAAACAA TTTCAACTGATATTCCCAAAAAAAGCATTCAGAAGCTAGGCTTTAACTTTGTAGTCTACT AGCACAGTGCTTGCTGGAGGCTTTGGCATAGGCTGCAAACCAATTTGGGCTCAGAGGGAA TATCAGTGATCCAATGCTGTTTGGAAAAACACTGAGCTCAGTTACACTTGAATTTTACAG TACAGAAGCACTGGGATTTTATGTGCCTTTTTGTACCTTTTTCAGATTGGAATTAGTTTT ATGTTTAAGGCTTTAATGGTACTGATTTCTGAAACGATAAGTAAAAGACAAAATATTTTG TGGCGGGAGCAGTAAGTTAAACCATGATATGCTTCAACATGCTTTTGTTACATTGCATTT GCTTTTATTAAAATATGAAATTAAACAGACAAACAAACCACTCATGGAGCAATTTTATTA TCTTGGGGGATGAGACCATGAGATTGGAAAATGTATATTATTTCTAGTTTTAGACTTTAG GTTTTTTTTTTTTTTTCACTAAAATCTTAAAACTTACGCAGCTGGTTGCAAATAAAGGGA GTTTTCATATCACCAATTTGTAGCAAAATTGAATTTTTTCATAAACTAGAATGTTAGACA CATTTTGGTCTTAATCCATGTACACTTTTTTATTTACTGTATTTTTTCCACTTCACTGTA AAAATGGTATGTGTACATAATGTTTTATTGGCATAGTCTATGGAGAAGTGCAAAAACTTC AGAACATGTGTATGTATTATTTGGACTATGGATTCAGGTTTTTTGCATGTTTATATCTTT CGTTATGGATAAAGTATTTACAAAACAAAGTGACATTTGATTCAATTATTGAGCTGTAGT TAGAATACTCAATTTTTAATTTTTTAATTTTTTATTTTTAATTTTCTTTTGTTTGGGGAG GGAGAAAAGTTCTTAGCACAAATGTTTTACATAATTTGTACCAAAAAAAAAAAAAAAAAG AAAGACAAGAAATGAAAGGGGTGGCCTGACACTGGTGGCACTACTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCAGTGTGACTCCAACGGGGACTGCACAGATGTGGATAGAATTGTAGGGGCGGGGCTG GGCACAGGTGCCATCATTGCCATCCTGCTCTGCATCATCATTCTGCTCATCCTTGTTCTC ATGTTTGTGGTATGGATGAAGCGCCGAGATAAAGAACGCCAGGCCAAGCAACTTTTAATT GATCCAGAAGATGATGTAAGAGATAATATTTTAAAATATGATGAAGAAGGTGGAGGAGAA GAAGACCAGGACTATGACTTGAGCCAGCTCCAGCAGCCTGATACTGTGGAACCAGATGCC ATCAAGCCTGTTGGAATCCGACGGTTGGATGAGAGACCCATCCATGCTGAGCCCCAGTAC CCGGTTCGATCTGCAGCCCCTCACCCTGGGGACATCGGGGACTTCATTAATGAGGGTCTT AAAGCTGCTGACAATGATCCCACAGCTCCGCCATATGACTCCCTTCTAGTCTTTGACTAT GAAGGCAGTGGCTCTACCGCTGGGTCCTTGAGCTCCCTTAATTCCTCCAGTAGTGGAGGT GAGCAGGACTATGACTACCTGAATGACTGGGGGCCACGTTTCAAGAAGCTCGCTGACATG TACGGTGGAGGTGATGACTGAACTTCAGGGTGAACTTGGTTTTGGGAAAAGTACAAACAA TTTCAACTGATATTCCCAAAAAAAGCATTCAGAAGCTAGGCTTTAACTTTGTAGTCTACT AGCACAGTGCTTGCTGGAGGCTTTGGCATAGGCTGCAAACCAATTTGGGCTCAGAGGGAA TATCAGTGATCCAATGCTGTTTGGAAAAACACTGAGCTCAGTTACACTTGAATTTTACAG TACAGAAGCACTGGGATTTTATGTGCCTTTTTGTACCTTTTTCAGATTGGAATTAGTTTT ATGTTTAAGGCTTTAATGGTACTGATTTCTGAAACGATAAGTAAAAGACAAAATATTTTG TGGCGGGAGCAGTAAGTTAAACCATGATATGCTTCAACATGCTTTTGTTACATTGCATTT GCTTTTATTAAAATATGAAATTAAACAGACAAACAAACCACTCATGGAGCAATTTTATTA TCTTGGGGGATGAGACCATGAGATTGGAAAATGTATATTATTTCTAGTTTTAGACTTTAG GTTTTTTTTTTTTTTTCACTAAAATCTTAAAACTTACGCAGCTGGTTGCAAATAAAGGGA GTTTTCATATCACCAATTTGTAGCAAAATTGAATTTTTTCATAAACTAGAATGTTAGACA CATTTTGGTCTTAATCCATGTACACTTTTTTATTTACTGTATTTTTTCCACTTCACTGTA AAAATGGTATGTGTACATAATGTTTTATTGGCATAGTCTATGGAGAAGTGCAAAAACTTC AGAACATGTGTATGTATTATTTGGACTATGGATTCAGGTTTTTTGCATGTTTATATCTTT CGTTATGGATAAAGTATTTACAAAACAAAGTGACATTTGATTCAATTATTGAGCTGTAGT TAGAATACTCAATTTTTAATTTTTTAATTTTTTATTTTTAATTTTCTTTTGTTTGGGGAG GGAGAAAAGTTCTTAGCACAAATGTTTTACATAATTTGTACCAAAAAAAAAAAAAAAAAG AAAGACAAGAAATGAAAGGGGTGGCCTGACACTGGTGGCACTACTATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 98-250, gnl|bosTau2|chr24 (20821320-20821167) | |
| 98-250, gnl|canFam2|chr7 (63922450-63922297) | |
| 98-250, gnl|danRer3|chr15 (29386068-29386221) | |
| 98-250, gnl|dasNov1|scaffold_261 (72704-72857) | |
| 98-250, gnl|echTel1|scaffold_316847 (122713-122866) | |
| 98-250, gnl|fr1|chrUn (258003467-258003620) | |
| 98-250, gnl|galGal2|chr2 (103994422-103994575) | |
| 98-250, gnl|hg17|chr18 (23816895-23817048) | |
| 98-250, gnl|Hg17|chr18 (23817058-23816905) | |
| 98-250, gnl|loxAfr1|scaffold_150 (242544-242391) | |
| 98-250, gnl|mm7|chr18 (16982459-16982612) | |
| 98-250, gnl|Mm7|chr18 (16982622-16982469) | |
| 98-250, gnl|monDom2|scaffold_21 (44795679-44795832) | |
| 98-250, gnl|oryCun1|scaffold_1542 (12507-12373) | |
| 98-250, gnl|panTro1|chr17 (19750220-19750373) | |
| 98-250, gnl|rheMac2|chr18 (20982453-20982606) | |
| 98-250, gnl|rn3|chr18 (8081505-8081658) | |
| 98-250, gnl|tetNig1|chr15 (6799061-6799207) | |
| 98-250, gnl|xenTro1|scaffold_102 (682855-683012) | |
| 413-617, gnl|bosTau2|chr13 (36332819-36332618) | |
| 413-617, gnl|canFam2|chr24 (49110510-49110721) | |
| 413-617, gnl|danRer3|chr15 (29380366-29380155) | |
| 413-617, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 413-617, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 413-617, gnl|fr1|chrUn (148012371-148012582) | |
| 413-617, gnl|galGal2|chr20 (7378550-7378757) | |
| 413-617, gnl|hg17|chr20 (59945188-59945399) | |
| 413-617, gnl|Hg17|chr20 (59945188-59945389) | |
| 413-617, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 413-617, gnl|mm7|chr2 (180396623-180396834) | |
| 413-617, gnl|Mm7|chr2 (180396623-180396824) | |
| 413-617, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 413-617, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 413-617, gnl|panTro1|chr21 (62951465-62951676) | |
| 413-617, gnl|rheMac2|chr10 (2593016-2592806) | |
| 413-617, gnl|rn3|chr3 (168885207-168885418) | |
| 413-617, gnl|tetNig1|chr15 (6793696-6793491) | |
| 413-617, gnl|xenTro1|scaffold_220 (321613-321824) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-250, gnl|bosTau2|chr24 (20821320-20821167) | |
| 98-250, gnl|canFam2|chr7 (63922450-63922297) | |
| 98-250, gnl|danRer3|chr15 (29386068-29386221) | |
| 98-250, gnl|dasNov1|scaffold_261 (72704-72857) | |
| 98-250, gnl|echTel1|scaffold_316847 (122713-122866) | |
| 98-250, gnl|fr1|chrUn (258003467-258003620) | |
| 98-250, gnl|galGal2|chr2 (103994422-103994575) | |
| 98-250, gnl|hg17|chr18 (23816895-23817048) | |
| 98-250, gnl|Hg17|chr18 (23817058-23816905) | |
| 98-250, gnl|loxAfr1|scaffold_150 (242544-242391) | |
| 98-250, gnl|mm7|chr18 (16982459-16982612) | |
| 98-250, gnl|Mm7|chr18 (16982622-16982469) | |
| 98-250, gnl|monDom2|scaffold_21 (44795679-44795832) | |
| 98-250, gnl|oryCun1|scaffold_1542 (12507-12373) | |
| 98-250, gnl|panTro1|chr17 (19750220-19750373) | |
| 98-250, gnl|rheMac2|chr18 (20982453-20982606) | |
| 98-250, gnl|rn3|chr18 (8081505-8081658) | |
| 98-250, gnl|tetNig1|chr15 (6799061-6799207) | |
| 98-250, gnl|xenTro1|scaffold_102 (682855-683012) | |
| 413-617, gnl|bosTau2|chr13 (36332819-36332618) | |
| 413-617, gnl|canFam2|chr24 (49110510-49110721) | |
| 413-617, gnl|danRer3|chr15 (29380366-29380155) | |
| 413-617, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 413-617, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 413-617, gnl|fr1|chrUn (148012371-148012582) | |
| 413-617, gnl|galGal2|chr20 (7378550-7378757) | |
| 413-617, gnl|hg17|chr20 (59945188-59945399) | |
| 413-617, gnl|Hg17|chr20 (59945188-59945389) | |
| 413-617, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 413-617, gnl|mm7|chr2 (180396623-180396834) | |
| 413-617, gnl|Mm7|chr2 (180396623-180396824) | |
| 413-617, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 413-617, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 413-617, gnl|panTro1|chr21 (62951465-62951676) | |
| 413-617, gnl|rheMac2|chr10 (2593016-2592806) | |
| 413-617, gnl|rn3|chr3 (168885207-168885418) | |
| 413-617, gnl|tetNig1|chr15 (6793696-6793491) | |
| 413-617, gnl|xenTro1|scaffold_220 (321613-321824) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| hea (0.613497) | |
| hlv (0.557025) | |
| cbr (0.511902) | |
| eye (0.511509) | |
| ova (0.387397) | |
| fhi (0.339155) | |
| spl (0.286369) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fbs (0.175346) | |
| lun (0.150489) | |
| che (0.136314) | |
| kid (0.129735) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.613497) | |
| hlv (0.557025) | |
| cbr (0.511902) | |
| eye (0.511509) | |
| ova (0.387397) | |
| fhi (0.339155) | |
| spl (0.286369) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fbs (0.175346) | |
| lun (0.150489) | |
| che (0.136314) | |
| kid (0.129735) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |