Non-Coding RNA Search

Ss1.1-rhlv14b_a13.5

Sequence:


               
               CCTTTATTCAGCCACACTAAGCACTCTGAGCCACAGCCATGGAGCCACCCTCTGGCCCCC
CTTAGCATTCAAGAAATATGGGTAGGCTAAAGCTGTCTTCAGGGGCTAGAGCTGAGGGAT
GGCCAGTGGGCTTAGGCTACTACTGTCCTGGGCAGTGAAAGGACCCAGAAAGTCAGCATC
TTGCCCTAGGTAGACCTCAGATGTCTTTCTCCATCCAGAATATGGGGCATCCTCTCAGGT
CTTGGTATTGTGTCTTCAGCAGGCTTTGTGGAAGGGGCCCTGCTGGAGGTGGGGGTAAGG
TGGTCACAGGCTCAGGCAGGGGAGGGGGGGGCGGCACTAATGGCCCCCTGGGGGCTCTTG
GGGCAGACTGGGCAGTCAGGCTAGGAGCCTTGCTGGGTGGCTGGGGAAAGGGGGCCTTAG
GGAAGGCACTGAGCAGGGTGGCAGGCAGCCGCCGACTGGTGAAGACCAGGCCCTGCACAG
GCTCACCCAGATGGTAGCCCAGATGGGCATAAAAGTGCAGCTGGTCATGGGTGGTGAGGT
GTAGCCGGTGGAAGCCCCGGGCCTGAGCAAAGGCCTCGAGGCCCTCCATGAGGCGGCGGC
CAAAGCCACGGCCCCTCAAGGCCCGGGCCACCACTACTGTCTCCACTAGGAGGCTCTGGG
GCCGGTCCAGCACGCGTGAGAGGCGAGCATGGCCCACCACAATGGGGGGTGCCCCCGGCA
TGGGATGGGGGCTCAGCAGCATCAAGCAGAGGGGGAAGGCATCTGAGGACTGGCCCAAGG
AGTGCAGGCGGGAGGCACGGCTGCGGGGCCACTGCTCGTTGATGAGGTCAGCACAGGCAT
CCAGGAGCTCAGGTCGGCAGTGCACAGGCTCCATGGTCAGCTCAGCCAGGTTGGGGACTG
GGGTCTCCTCTGGCTGGCGTGCAGGATCCAGGGTCAGCTCTGGATGGCATGCGGAACCCA
GGGTCAGCTCATCTAGCCTGGGGCTCAGAGTCAGCTCTGGCTGGTGTGTAGGATCCAGGG
TCAGCTTGGCCAGTTGGATCTCAGGGTCACCTCTGGGTGGCATGCAGGATCCAGAGTCAG
CTGGGCTGGGTTGGTACTCAGGATCAGCTCCACATGTTGACGCCGGGCTCCGGGATGCTC
CGCGTCCTCACTCCGCACGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTATTCAGCCACACTAAGCACTCTGAGCCACAGCCATGGAGCCACCCTCTGGCCCCC
CTTAGCATTCAAGAAATATGGGTAGGCTAAAGCTGTCTTCAGGGGCTAGAGCTGAGGGAT
GGCCAGTGGGCTTAGGCTACTACTGTCCTGGGCAGTGAAAGGACCCAGAAAGTCAGCATC
TTGCCCTAGGTAGACCTCAGATGTCTTTCTCCATCCAGAATATGGGGCATCCTCTCAGGT
CTTGGTATTGTGTCTTCAGCAGGCTTTGTGGAAGGGGCCCTGCTGGAGGTGGGGGTAAGG
TGGTCACAGGCTCAGGCAGGGGAGGGGGGGGCGGCACTAATGGCCCCCTGGGGGCTCTTG
GGGCAGACTGGGCAGTCAGGCTAGGAGCCTTGCTGGGTGGCTGGGGAAAGGGGGCCTTAG
GGAAGGCACTGAGCAGGGTGGCAGGCAGCCGCCGACTGGTGAAGACCAGGCCCTGCACAG
GCTCACCCAGATGGTAGCCCAGATGGGCATAAAAGTGCAGCTGGTCATGGGTGGTGAGGT
GTAGCCGGTGGAAGCCCCGGGCCTGAGCAAAGGCCTCGAGGCCCTCCATGAGGCGGCGGC
CAAAGCCACGGCCCCTCAAGGCCCGGGCCACCACTACTGTCTCCACTAGGAGGCTCTGGG
GCCGGTCCAGCACGCGTGAGAGGCGAGCATGGCCCACCACAATGGGGGGTGCCCCCGGCA
TGGGATGGGGGCTCAGCAGCATCAAGCAGAGGGGGAAGGCATCTGAGGACTGGCCCAAGG
AGTGCAGGCGGGAGGCACGGCTGCGGGGCCACTGCTCGTTGATGAGGTCAGCACAGGCAT
CCAGGAGCTCAGGTCGGCAGTGCACAGGCTCCATGGTCAGCTCAGCCAGGTTGGGGACTG
GGGTCTCCTCTGGCTGGCGTGCAGGATCCAGGGTCAGCTCTGGATGGCATGCGGAACCCA
GGGTCAGCTCATCTAGCCTGGGGCTCAGAGTCAGCTCTGGCTGGTGTGTAGGATCCAGGG
TCAGCTTGGCCAGTTGGATCTCAGGGTCACCTCTGGGTGGCATGCAGGATCCAGAGTCAG
CTGGGCTGGGTTGGTACTCAGGATCAGCTCCACATGTTGACGCCGGGCTCCGGGATGCTC
CGCGTCCTCACTCCGCACGGCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6RUR0_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6RUR0_PIG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-193, - strand, RNAz p=0.859973
               

               
               390-709, - strand, RNAz p=0.992039
               

               
               910-1041, + strand, RNAz p=0.989726

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-193, - strand, RNAz p=0.859973
               

               
               390-709, - strand, RNAz p=0.992039
               

               
               910-1041, + strand, RNAz p=0.989726

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_012191, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012191, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1105, gnl|bosTau2|chr22 (38562091-38563182)
               

               
               1-1105, gnl|Hg17|chr3 (50308849-50309856)
               

               
               1-1105, gnl|Mm7|chr9 (107313483-107312398)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1105, gnl|bosTau2|chr22 (38562091-38563182)
               

               
               1-1105, gnl|Hg17|chr3 (50308849-50309856)
               

               
               1-1105, gnl|Mm7|chr9 (107313483-107312398)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)

	1-193, - strand, RNAz p=0.859973
	390-709, - strand, RNAz p=0.992039
	910-1041, + strand, RNAz p=0.989726

	1-1105, gnl\|bosTau2\|chr22 (38562091-38563182)
	1-1105, gnl\|Hg17\|chr3 (50308849-50309856)
	1-1105, gnl\|Mm7\|chr9 (107313483-107312398)