Non-Coding RNA Search

Ss1.1-rhlv14b_j10.5

Sequence:


               
               GGCAGTGGGTTGGGTGGGTCTGGAGGTCTGGGCTGACCTGCCCTCCCTGGTGCCCTTGGT
ACCGCATCCTCGCCCACCTCACGGGCACCGAGTTCAGTAAGTGCCAGCCCAGGGAAGGGC
AGACTCTCCTCCTGGCCACTGGTCCAGGCCTAGGCTCAGCTGGTGCCTGCTCTGGCAGCA
TGTGACCCCCTGCCAGGGCTCACGGCCGGGGTGGGCCTCTGTCTTCTCTTGGCCAATGCC
TGTCTCTGCCCTCTCAGTGCAAGACCCGGATGAGGAGCACCTGAAAAAATCAAGGTAACA
GGAGGAGCGCCAGTCCCTCTTTCTCACCTCCTGTCTCTCCAATTCCAGCCACCACCCTGA
GGCTGCTCCTGGCTGCCCCTAGCCAGACTTCTTCATTCTCCTTCCTTCTGTCTGCCTTCT
TCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCTGTCTCTCCTTCCTTCCACTTCCTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGTGGGTTGGGTGGGTCTGGAGGTCTGGGCTGACCTGCCCTCCCTGGTGCCCTTGGT
ACCGCATCCTCGCCCACCTCACGGGCACCGAGTTCAGTAAGTGCCAGCCCAGGGAAGGGC
AGACTCTCCTCCTGGCCACTGGTCCAGGCCTAGGCTCAGCTGGTGCCTGCTCTGGCAGCA
TGTGACCCCCTGCCAGGGCTCACGGCCGGGGTGGGCCTCTGTCTTCTCTTGGCCAATGCC
TGTCTCTGCCCTCTCAGTGCAAGACCCGGATGAGGAGCACCTGAAAAAATCAAGGTAACA
GGAGGAGCGCCAGTCCCTCTTTCTCACCTCCTGTCTCTCCAATTCCAGCCACCACCCTGA
GGCTGCTCCTGGCTGCCCCTAGCCAGACTTCTTCATTCTCCTTCCTTCTGTCTGCCTTCT
TCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCTGTCTCTCCTTCCTTCCACTTCCTCCTCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               130-248, - strand, RNAz p=0.980778
               

               
               289-403, - strand, RNAz p=0.99518

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-248, - strand, RNAz p=0.980778
               

               
               289-403, - strand, RNAz p=0.99518

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               95-202, - strand, RNAmicro p=0.940968

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               95-202, - strand, RNAmicro p=0.940968

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-476, gnl|bosTau2|chr7 (21764311-21763902)
               

               
               50-476, gnl|Hg17|chr5 (176850663-176850211)
               

               
               50-476, gnl|Mm7|chr13 (54595445-54595045)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-476, gnl|bosTau2|chr7 (21764311-21763902)
               

               
               50-476, gnl|Hg17|chr5 (176850663-176850211)
               

               
               50-476, gnl|Mm7|chr13 (54595445-54595045)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	130-248, - strand, RNAz p=0.980778
	289-403, - strand, RNAz p=0.99518

	50-476, gnl\|bosTau2\|chr7 (21764311-21763902)
	50-476, gnl\|Hg17\|chr5 (176850663-176850211)
	50-476, gnl\|Mm7\|chr13 (54595445-54595045)