Non-Coding RNA Search

Ss1.1-rhlv15b_e21.5

Sequence:


               
               AGGGAAGGAGCAGGACTCATGCGCAAGTAGGAAGAGAAGGACGGAGATGAGAAGGGGTGT
GGATTGGTTTCCCCAGGGTGGAGCCTTTAGGTTTGTGCCAAGTACAGTGCCGGGCTGTCA
GCTCACCCGTCCCTAGGATCAGTGGGGCTCCCAACAGGAAGACCCGCCACCCGCACCCTG
CCTTGGGGATGGAGGTGTGAGTCCAGGGGCTGGGCAGCAGCAGCCTGGGAAATGGCTCTT
TTGAGGTCTGGGCCTGGTGTTGGCCTCCCCATCCTATGGTTGGGAGCAGAGAGAAGGATC
TGTCTTATGGAGGGGCCGGTCAGCTTCGGGGGCTGTCCTAACCATTTCTGCGACATCATC
TTGTCTCCCTTCCCCCTGGAATGTGCCGTGGGCCAGCCAAGGGTGTGCCCTGGGAAGAGG
GAATGTGGCCTCAATCTGGTAAGCCAGATTCTGGGCCCTACCCTGCATTCCCTGATGAGG
ACACGTTGAGGCTTATGGAAAGCCTCTCTTCTAGCCTGGCTCTCTTCCAACCCACCTACC
CATGGGCCGGTGGTGGAGAGACAGAAGCAAAGCTTCTTCTCCCTCTGACCCGCCCCCCTT
GAGATGAATGTAGCCAGAGACGATGAAGGAGAGAGAGAGTGAAGCCGAAAAACCTTGGCC
CTAGGCCTGCTCTTTGCCAGAGTTGCTGTCCAGAGACTTCAGCCTGACCTCCCACGGCCC
CAGGAACGACTACCTTAACTTCCACCAATTCTTCTTCACGCCTTCCTGGCTGGGACAGTT
ATGGTTCATATGCAAGTAAAGATG------------------------------------
------------------------------------TCATGCTTCTGAGGGATTACCGAC
TGGGGGGATGCCATGCACCTTCACTTCTAGCAAGTTGTTTGAACATGACCCTTGGCTGCA
TTTCCCATCTTCGGCACAGCTCAAGCACCCTAAACCTGTCCTCTCCCCCCACAGACCGGC
AGGTGGGGTTGGCTCCCAGGTAACCCTCTCTCCCTTCTCCATCTTCTCCCACACCTTCTC
CATCCATAAGAAACTGGTTTTTCGGGGCCTTCCATGCCTTCCCCTTTCTTTGNCTCTCTC
TTTTTTTTTTTTTAAAGCGATATTTTTCAAAATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAAGGAGCAGGACTCATGCGCAAGTAGGAAGAGAAGGACGGAGATGAGAAGGGGTGT
GGATTGGTTTCCCCAGGGTGGAGCCTTTAGGTTTGTGCCAAGTACAGTGCCGGGCTGTCA
GCTCACCCGTCCCTAGGATCAGTGGGGCTCCCAACAGGAAGACCCGCCACCCGCACCCTG
CCTTGGGGATGGAGGTGTGAGTCCAGGGGCTGGGCAGCAGCAGCCTGGGAAATGGCTCTT
TTGAGGTCTGGGCCTGGTGTTGGCCTCCCCATCCTATGGTTGGGAGCAGAGAGAAGGATC
TGTCTTATGGAGGGGCCGGTCAGCTTCGGGGGCTGTCCTAACCATTTCTGCGACATCATC
TTGTCTCCCTTCCCCCTGGAATGTGCCGTGGGCCAGCCAAGGGTGTGCCCTGGGAAGAGG
GAATGTGGCCTCAATCTGGTAAGCCAGATTCTGGGCCCTACCCTGCATTCCCTGATGAGG
ACACGTTGAGGCTTATGGAAAGCCTCTCTTCTAGCCTGGCTCTCTTCCAACCCACCTACC
CATGGGCCGGTGGTGGAGAGACAGAAGCAAAGCTTCTTCTCCCTCTGACCCGCCCCCCTT
GAGATGAATGTAGCCAGAGACGATGAAGGAGAGAGAGAGTGAAGCCGAAAAACCTTGGCC
CTAGGCCTGCTCTTTGCCAGAGTTGCTGTCCAGAGACTTCAGCCTGACCTCCCACGGCCC
CAGGAACGACTACCTTAACTTCCACCAATTCTTCTTCACGCCTTCCTGGCTGGGACAGTT
ATGGTTCATATGCAAGTAAAGATG------------------------------------
------------------------------------TCATGCTTCTGAGGGATTACCGAC
TGGGGGGATGCCATGCACCTTCACTTCTAGCAAGTTGTTTGAACATGACCCTTGGCTGCA
TTTCCCATCTTCGGCACAGCTCAAGCACCCTAAACCTGTCCTCTCCCCCCACAGACCGGC
AGGTGGGGTTGGCTCCCAGGTAACCCTCTCTCCCTTCTCCATCTTCTCCCACACCTTCTC
CATCCATAAGAAACTGGTTTTTCGGGGCCTTCCATGCCTTCCCCTTTCTTTGNCTCTCTC
TTTTTTTTTTTTTAAAGCGATATTTTTCAAAATATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               387-497, - strand, RNAz p=0.717532

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-497, - strand, RNAz p=0.717532

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               395-502, + strand, RNAmicro p=0.970026

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               395-502, + strand, RNAmicro p=0.970026

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               308-807, gnl|bosTau2|chr16 (2151884-2152383)
               

               
               308-807, gnl|canFam2|chr38 (3797548-3797918)
               

               
               308-807, gnl|echTel1|scaffold_206337 (1788-2114)
               

               
               308-807, gnl|hg17|chr1 (200922017-200922338)
               

               
               308-807, gnl|Hg17|chr1 (200922473-200922017)
               

               
               308-807, gnl|loxAfr1|scaffold_43465 (4474-4108)
               

               
               308-807, gnl|mm7|chr1 (133202127-133201792)
               

               
               308-807, gnl|Mm7|chr1 (133201682-133202125)
               

               
               308-807, gnl|monDom2|scaffold_13 (5338086-5338474)
               

               
               308-807, gnl|oryCun1|scaffold_202428 (3593-3825)
               

               
               308-807, gnl|panTro1|chr1 (183863066-183863384)
               

               
               308-807, gnl|rheMac2|chr1 (166211870-166211532)
               

               
               308-807, gnl|rn3|chr13 (46230756-46230426)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               308-807, gnl|bosTau2|chr16 (2151884-2152383)
               

               
               308-807, gnl|canFam2|chr38 (3797548-3797918)
               

               
               308-807, gnl|echTel1|scaffold_206337 (1788-2114)
               

               
               308-807, gnl|hg17|chr1 (200922017-200922338)
               

               
               308-807, gnl|Hg17|chr1 (200922473-200922017)
               

               
               308-807, gnl|loxAfr1|scaffold_43465 (4474-4108)
               

               
               308-807, gnl|mm7|chr1 (133202127-133201792)
               

               
               308-807, gnl|Mm7|chr1 (133201682-133202125)
               

               
               308-807, gnl|monDom2|scaffold_13 (5338086-5338474)
               

               
               308-807, gnl|oryCun1|scaffold_202428 (3593-3825)
               

               
               308-807, gnl|panTro1|chr1 (183863066-183863384)
               

               
               308-807, gnl|rheMac2|chr1 (166211870-166211532)
               

               
               308-807, gnl|rn3|chr13 (46230756-46230426)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               hlv (0.139256)

	308-807, gnl\|bosTau2\|chr16 (2151884-2152383)
	308-807, gnl\|canFam2\|chr38 (3797548-3797918)
	308-807, gnl\|echTel1\|scaffold_206337 (1788-2114)
	308-807, gnl\|hg17\|chr1 (200922017-200922338)
	308-807, gnl\|Hg17\|chr1 (200922473-200922017)
	308-807, gnl\|loxAfr1\|scaffold_43465 (4474-4108)
	308-807, gnl\|mm7\|chr1 (133202127-133201792)
	308-807, gnl\|Mm7\|chr1 (133201682-133202125)
	308-807, gnl\|monDom2\|scaffold_13 (5338086-5338474)
	308-807, gnl\|oryCun1\|scaffold_202428 (3593-3825)
	308-807, gnl\|panTro1\|chr1 (183863066-183863384)
	308-807, gnl\|rheMac2\|chr1 (166211870-166211532)
	308-807, gnl\|rn3\|chr13 (46230756-46230426)