Non-Coding RNA Search

Ss1.1-rhlv16b_a23.5

Sequence:


               
               GAGTCAGAAAACTTTCCAGCTAAACACCGATAAGACTTCATACAACTCACAATATTCTAT
ACTGTGATCATCATAAACAGCCAAGGCTGCCTAAAAGAAGACAGTGATCTCATATTTGGC
TGGTAGCTTTTTCAGCTTTCTCTTGACGGCTTAAAACTTCAGGCTTCCTGCCTTCCTGGT
ATCATGGATAAAGTCCAATACCTCACTCGCTCTGCTATTAGAAGAGCTTCAACCATTGAA
ATGCCTCAACAAGCACGTCAAAACCTTCAGAACCTATTTATCAATTTCTGTCTCATCTTA
ATATGCCTCTTGCTGATTTGCATCATCGTGATGCTTCTCTGAAGTTCTGCCACAATCTCC
AGTGCTACAATTTATCACCATCAGCTTAAAATCTGTCATCCCATGAAGAAGGGAAACAAT
ACTATATAAGAGACCACTTCCTCAGCAGAAGAAGTTCTTTATGAAAAGGTCAAGATTTGG
AATGAAACAAATTGTTAGCAAATGTATTCATCTGCTGGATCTTGTAAACATGAAAAGGGC
TTTATTTTCAGAAACTAACTTTAAAATGACTATAAGTGTGCATAATGCAACTGTTGATTT
TCTCAACAGAGCTTATAAATTTCTATCCCAAATCTTTTCTGAGGATGAACTAGGGGTTTA
GTTTGGAAACTGCACTGCTAACTAGTTCACGTCATATATAAAGCATTAGCTTCACTCTTT
GGGGTAAATATAATTTATACTGTATAAAAGCCTCTTCTTTGATGTTTATTAAGTATTTTT
CAGGTCTTCACCAAGTGTACCAAAATAATCATTCAAATGAACTATCATTTGAAATAGCCC
ACTGACTCCTCACATCTGCTGTCTTTATTATCATCACACAGAAATCTCTAGTGGTATCAG
AACCTACATTCTAAAAGAGAACTTGTATTCTTTTCTCTATACTACACTAATATTTTAAAA
AATTTATGAGAATCAAGTAGGAAAAAGACCATATCCTTACATAAACAAAATTTCTCTTAA
CCATTTTTCTCAAAGAATTATAGAATTCTAGTACATATAGGTAAAACTATAAATCTGTTC
TCTATACACAAGAACTGCTGGTTAATTTAACATGTGACATTGTGATTAGCCATAATTACT
AATACACTAATAGAATAGAATCTACCTTAATTTAAGGCACAATAGATAATTATCTGAGTT
AGAACACATAACTTGCCACACTTTATCTCTGGAATCATGAAATCTTAAGAAGACATTAGA
GTGATTTTATAGGTTACCTTCTATTCTAATTTCACCCACAATGTAGACAAGGGAAAGAAT
AAAAAATATTATTTCAAGCATTAAAAATAAAATTTGAAATATCTCTCCAGAATTAACAAA
TTCTTTGATTAAATTTTGAAACGAACTTTTGTCATTACTGTTCATGATAGGATATAGCTA
TTTTCCTTAATCTAACAACCAAATGGTAAACACCTATTTGGTAGGCCACTGTACTATGCT
AAATTACAGATACAGCTATGCTAATCTACAATTATTTTTTTGCTAAATACATTTCCAATT
TTCCCTCTGATCATTTAAAAATAACTTCCAACAATTCATAAAACAAAAGAAGTAAAAAAA
CTGGTTTGGGAAATACATTCACCAAAATTTAGTGAATTAAATTGAGTCAGTTTAAAACTG
AGTCTAAAATGGTTTACATCTATACTGTATAATTCAATAATTTTAAGTTCAAGATATATA
AGCAATATAATAATTATTGGGGAAGTAGAGAATGTGCAATTTATTATACGGTTTGCTAAA
GTATGGTTACTAAAAGAATTGGAAAAGTCAATATTGACCTTGGTTTTCAACATAAGTGCT
GCTAACAAAGGAAATAATGCTTTTAAGTTTTTTCTGAATCCCTGGATGGATGAGGATAAT
TTTGGATTGCTGATATTTAAGGAACAGAGGGAAAAGGGGTTTCACACTGATAGAGGGATT
TCTTGAGCAAAGCCTCATCTATGGGTTGAAAATCCTATTAGCAACTAGAAGAGTTTATAA
GCAATAAATGAGACAACTGCTTTACTGGTGGCAGTAATTCCCCATGTAAAAAGTAACCAA
TTCTATAATTAGTGTAATGACCTTAAAATAAATGGAAAATTTGAAATAATAAGTTCTACC
CTTTTCATTACATTGCTCATTACAATATCAACTTAAAGCTATAAACTGTGAAAGTTATGG
AGTTTTCCCTAAGTCAAACAGAAATAGTTTTTTTTGTTTTTGTTTTTCATTCTGCCTTTA
ATAGAAATTAAAACCTTACACTTGAGAATTACAGAATACTATAACTCAGATTATACTGTA
AAATAAAACCTATTCTTTAGATGGAACTTATTCTGTTTACCAGGATGTATAAAGAGTAAA
ATACAATAAACTATGTATTTAAAAAATTTTAAATACCAAATGCGCAAATACTTTCTACTA
TAGAATAAATCCTAATATTACTGTGCAGGGTACCAACTATGAGCTAATTTTAAATGTTTA
ATGTCGCCTTCTACGTTTTATTTGGTTCAAAATGTTTATTTAACGCAAATCACCTACATT
AAAAAGAAACTTCCTGAACCCAGTGAATTCACTCATGATTGATATGACCATAAAACAATC
TAATTATAAGCAGTTTTGATTTTGTAGGCTGTTTTCTGTGACTTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCAGAAAACTTTCCAGCTAAACACCGATAAGACTTCATACAACTCACAATATTCTAT
ACTGTGATCATCATAAACAGCCAAGGCTGCCTAAAAGAAGACAGTGATCTCATATTTGGC
TGGTAGCTTTTTCAGCTTTCTCTTGACGGCTTAAAACTTCAGGCTTCCTGCCTTCCTGGT
ATCATGGATAAAGTCCAATACCTCACTCGCTCTGCTATTAGAAGAGCTTCAACCATTGAA
ATGCCTCAACAAGCACGTCAAAACCTTCAGAACCTATTTATCAATTTCTGTCTCATCTTA
ATATGCCTCTTGCTGATTTGCATCATCGTGATGCTTCTCTGAAGTTCTGCCACAATCTCC
AGTGCTACAATTTATCACCATCAGCTTAAAATCTGTCATCCCATGAAGAAGGGAAACAAT
ACTATATAAGAGACCACTTCCTCAGCAGAAGAAGTTCTTTATGAAAAGGTCAAGATTTGG
AATGAAACAAATTGTTAGCAAATGTATTCATCTGCTGGATCTTGTAAACATGAAAAGGGC
TTTATTTTCAGAAACTAACTTTAAAATGACTATAAGTGTGCATAATGCAACTGTTGATTT
TCTCAACAGAGCTTATAAATTTCTATCCCAAATCTTTTCTGAGGATGAACTAGGGGTTTA
GTTTGGAAACTGCACTGCTAACTAGTTCACGTCATATATAAAGCATTAGCTTCACTCTTT
GGGGTAAATATAATTTATACTGTATAAAAGCCTCTTCTTTGATGTTTATTAAGTATTTTT
CAGGTCTTCACCAAGTGTACCAAAATAATCATTCAAATGAACTATCATTTGAAATAGCCC
ACTGACTCCTCACATCTGCTGTCTTTATTATCATCACACAGAAATCTCTAGTGGTATCAG
AACCTACATTCTAAAAGAGAACTTGTATTCTTTTCTCTATACTACACTAATATTTTAAAA
AATTTATGAGAATCAAGTAGGAAAAAGACCATATCCTTACATAAACAAAATTTCTCTTAA
CCATTTTTCTCAAAGAATTATAGAATTCTAGTACATATAGGTAAAACTATAAATCTGTTC
TCTATACACAAGAACTGCTGGTTAATTTAACATGTGACATTGTGATTAGCCATAATTACT
AATACACTAATAGAATAGAATCTACCTTAATTTAAGGCACAATAGATAATTATCTGAGTT
AGAACACATAACTTGCCACACTTTATCTCTGGAATCATGAAATCTTAAGAAGACATTAGA
GTGATTTTATAGGTTACCTTCTATTCTAATTTCACCCACAATGTAGACAAGGGAAAGAAT
AAAAAATATTATTTCAAGCATTAAAAATAAAATTTGAAATATCTCTCCAGAATTAACAAA
TTCTTTGATTAAATTTTGAAACGAACTTTTGTCATTACTGTTCATGATAGGATATAGCTA
TTTTCCTTAATCTAACAACCAAATGGTAAACACCTATTTGGTAGGCCACTGTACTATGCT
AAATTACAGATACAGCTATGCTAATCTACAATTATTTTTTTGCTAAATACATTTCCAATT
TTCCCTCTGATCATTTAAAAATAACTTCCAACAATTCATAAAACAAAAGAAGTAAAAAAA
CTGGTTTGGGAAATACATTCACCAAAATTTAGTGAATTAAATTGAGTCAGTTTAAAACTG
AGTCTAAAATGGTTTACATCTATACTGTATAATTCAATAATTTTAAGTTCAAGATATATA
AGCAATATAATAATTATTGGGGAAGTAGAGAATGTGCAATTTATTATACGGTTTGCTAAA
GTATGGTTACTAAAAGAATTGGAAAAGTCAATATTGACCTTGGTTTTCAACATAAGTGCT
GCTAACAAAGGAAATAATGCTTTTAAGTTTTTTCTGAATCCCTGGATGGATGAGGATAAT
TTTGGATTGCTGATATTTAAGGAACAGAGGGAAAAGGGGTTTCACACTGATAGAGGGATT
TCTTGAGCAAAGCCTCATCTATGGGTTGAAAATCCTATTAGCAACTAGAAGAGTTTATAA
GCAATAAATGAGACAACTGCTTTACTGGTGGCAGTAATTCCCCATGTAAAAAGTAACCAA
TTCTATAATTAGTGTAATGACCTTAAAATAAATGGAAAATTTGAAATAATAAGTTCTACC
CTTTTCATTACATTGCTCATTACAATATCAACTTAAAGCTATAAACTGTGAAAGTTATGG
AGTTTTCCCTAAGTCAAACAGAAATAGTTTTTTTTGTTTTTGTTTTTCATTCTGCCTTTA
ATAGAAATTAAAACCTTACACTTGAGAATTACAGAATACTATAACTCAGATTATACTGTA
AAATAAAACCTATTCTTTAGATGGAACTTATTCTGTTTACCAGGATGTATAAAGAGTAAA
ATACAATAAACTATGTATTTAAAAAATTTTAAATACCAAATGCGCAAATACTTTCTACTA
TAGAATAAATCCTAATATTACTGTGCAGGGTACCAACTATGAGCTAATTTTAAATGTTTA
ATGTCGCCTTCTACGTTTTATTTGGTTCAAAATGTTTATTTAACGCAAATCACCTACATT
AAAAAGAAACTTCCTGAACCCAGTGAATTCACTCATGATTGATATGACCATAAAACAATC
TAATTATAAGCAGTTTTGATTTTGTAGGCTGTTTTCTGTGACTTTTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q56UH4_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q56UH4_CANFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-274, - strand, RNAz p=0.866007

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-274, - strand, RNAz p=0.866007

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               116-1618, gnl|bosTau2|chr9 (16247112-16248592)
               

               
               116-1618, gnl|Hg17|chr6 (118986711-118988650)
               


               
               1970-2688, gnl|bosTau2|chr9 (16248815-16249522)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-1618, gnl|bosTau2|chr9 (16247112-16248592)
               

               
               116-1618, gnl|Hg17|chr6 (118986711-118988650)
               


               
               1970-2688, gnl|bosTau2|chr9 (16248815-16249522)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               hea (9.40695)
               

               
               isp (5.56391)
               

               
               vin (3.65813)
               

               
               bfe (2.99715)
               

               
               ssp (2.57487)
               

               
               hlv (2.36736)
               

               
               tbr (1.69596)
               

               
               ldo (0.970026)
               

               
               gul (0.887942)
               

               
               sme (0.610874)
               

               
               ste (0.540833)
               

               
               ctl (0.459207)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (9.40695)
               

               
               isp (5.56391)
               

               
               vin (3.65813)
               

               
               bfe (2.99715)
               

               
               ssp (2.57487)
               

               
               hlv (2.36736)
               

               
               tbr (1.69596)
               

               
               ldo (0.970026)
               

               
               gul (0.887942)
               

               
               sme (0.610874)
               

               
               ste (0.540833)
               

               
               ctl (0.459207)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	116-1618, gnl\|bosTau2\|chr9 (16247112-16248592)
	116-1618, gnl\|Hg17\|chr6 (118986711-118988650)

	1970-2688, gnl\|bosTau2\|chr9 (16248815-16249522)

	hea (9.40695)
	isp (5.56391)
	vin (3.65813)
	bfe (2.99715)
	ssp (2.57487)
	hlv (2.36736)
	tbr (1.69596)
	ldo (0.970026)
	gul (0.887942)
	sme (0.610874)
	ste (0.540833)
	ctl (0.459207)
	lin (0.436808)
	kid (0.389206)
	bla (0.248694)
	mgp (0.230681)
	nms (0.213858)
	tes (0.207814)
	aor (0.195274)
	sag (0.182715)
	mga (0.160205)
	spl (0.143184)
	pla (0.133672)
	ret (0.128733)
	sug (0.127291)
	spc (0.113366)