Non-Coding RNA Search

Ss1.1-rhlv16b_g21.5

Sequence:


               
               CCGGATCCGGACACTGCTGGGCTGCCTAGTCAAGGTGCTGCTGTGGGTGGCCTCTGCTTT
GCTATACTTTGGAAGTGAACAGGCTGCCCGCCTCCTGGGTAGCCCCTGCTTGCGGCGCCT
CTACCACGCCTGGCTGGCAGCCGTGGTCATCTTCGGGCCCCTTCTGCAGTTCCATGTCAA
CCCTCGGACCATCTTCGCCAGCCACGGCAACTTCTTCAACATAAAGTTTGTGAATTCGGC
ATGGGGCTGGACGTGCACCTTCCTGGGGGGCTTCGTGTTGCTGGTGGTGTTCCTGGCTAC
ACGGCGCGTGGCAGTGACAGCGAGGCACCTGAGCCGGCTGGTGGTGGGGGCCGCCGTGTG
GCGAGGGGCCGGACGGGCCTTCCTGCTCATTGAGGACCTGACCGGCTCCTGCTTCGAGCC
TCTGCCCCAGGGCCTGCTGCTCCACGAGCTGCCAGACCGCCGCAGCTGCCTGGCGGCCGG
CCACCAGTGGCGAGGCTACACCGTCTCCTCCCACACCTTCCTGCTCACCTTCTGCTGCCT
GCTCATGGCCGAGGAAGCAGCCGTGTTCGCCAAGTACCTGGCCCATGGGCTGCCCGCCGG
TGCGCCCCTGCGCCTCGTCTTTCTGCTCAACGTGCTGTTGCTGGGCCTCTGGAACTTCTT
GCTGCTCTGTACGGTCATCTATTTCCACCAGTATACCCACAAGGTGGTGGGTGCCGCAGT
GGGCACCTTTGCCTGGTACCTAACCTACGGCAGCTGGTATCATCAGCCCTGGTCTCCGGG
GAGCCCGGGCCATGGGCTCTTCACTCACCCCAGCCGCAAGCATAACTGAAAGAAATAAAG
GCACGTTGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGATCCGGACACTGCTGGGCTGCCTAGTCAAGGTGCTGCTGTGGGTGGCCTCTGCTTT
GCTATACTTTGGAAGTGAACAGGCTGCCCGCCTCCTGGGTAGCCCCTGCTTGCGGCGCCT
CTACCACGCCTGGCTGGCAGCCGTGGTCATCTTCGGGCCCCTTCTGCAGTTCCATGTCAA
CCCTCGGACCATCTTCGCCAGCCACGGCAACTTCTTCAACATAAAGTTTGTGAATTCGGC
ATGGGGCTGGACGTGCACCTTCCTGGGGGGCTTCGTGTTGCTGGTGGTGTTCCTGGCTAC
ACGGCGCGTGGCAGTGACAGCGAGGCACCTGAGCCGGCTGGTGGTGGGGGCCGCCGTGTG
GCGAGGGGCCGGACGGGCCTTCCTGCTCATTGAGGACCTGACCGGCTCCTGCTTCGAGCC
TCTGCCCCAGGGCCTGCTGCTCCACGAGCTGCCAGACCGCCGCAGCTGCCTGGCGGCCGG
CCACCAGTGGCGAGGCTACACCGTCTCCTCCCACACCTTCCTGCTCACCTTCTGCTGCCT
GCTCATGGCCGAGGAAGCAGCCGTGTTCGCCAAGTACCTGGCCCATGGGCTGCCCGCCGG
TGCGCCCCTGCGCCTCGTCTTTCTGCTCAACGTGCTGTTGCTGGGCCTCTGGAACTTCTT
GCTGCTCTGTACGGTCATCTATTTCCACCAGTATACCCACAAGGTGGTGGGTGCCGCAGT
GGGCACCTTTGCCTGGTACCTAACCTACGGCAGCTGGTATCATCAGCCCTGGTCTCCGGG
GAGCCCGGGCCATGGGCTCTTCACTCACCCCAGCCGCAAGCATAACTGAAAGAAATAAAG
GCACGTTGGGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CTD0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CTD0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               658-811, - strand, RNAz p=0.875441

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               658-811, - strand, RNAz p=0.875441

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               219-846, gnl|bosTau2|chr10 (12376312-12375679)
               

               
               219-846, gnl|Hg17|chr14 (23671256-23671888)
               

               
               219-846, gnl|Mm7|chr14 (50443607-50444240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               219-846, gnl|bosTau2|chr10 (12376312-12375679)
               

               
               219-846, gnl|Hg17|chr14 (23671256-23671888)
               

               
               219-846, gnl|Mm7|chr14 (50443607-50444240)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hlv (0.557025)
               

               
               ese (0.379507)
               

               
               mas (0.210305)
               

               
               che (0.136314)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.557025)
               

               
               ese (0.379507)
               

               
               mas (0.210305)
               

               
               che (0.136314)
               

               
               eru (0.120048)

	219-846, gnl\|bosTau2\|chr10 (12376312-12375679)
	219-846, gnl\|Hg17\|chr14 (23671256-23671888)
	219-846, gnl\|Mm7\|chr14 (50443607-50444240)

	hlv (0.557025)
	ese (0.379507)
	mas (0.210305)
	che (0.136314)
	eru (0.120048)