Non-Coding RNA Search

Ss1.1-rhlv16b_n9.5

Sequence:


               
               GCAGTGCTGATGTTTGATAAGACGACCAACAGGCACAGAGGGTTTGGCTTTGTCACTTTT
GAGAATGAAGATGTGGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAATAAA
ATGGTGGAATGTAAGAAAGCTCAGCCGAAGGAAGTCATGTTCCCACCTGGGACAAGAAGC
CGGGCCCGGGGACTGCCTTACACCATGGATGCGTTCATGCTTGGCATGGGGATGCTGGGC
TACCCCAACTTCGTGGCGACCTATGGCCGCGGCTACCCCGGATTTGCTCCTAGCTATGGC
TATCAGTTCCCAGGCTTCCCGGCAGCGGCTTACTGACCAGTGGCAGCGGCGGCAGTGGCG
GCTAGCCAGAGGATCAGTCCTGAATAGCTACAGTGCTCAACCGAATTTTGGCGCGCCCGC
TTCCCCGGCAGGCTCCAACCCCGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAAG
ACCTGTCGCCGATCTCTATGGCCCTGCCATCCAGGACTCCGGAGTGGGGAATTACATAAG
TGCTGCCAGCCCACAGCCGGGCTCGGGCTTCTGCCACGGCATAGCTGGACCTTTGATTGC
AACGGCCTTTACAAATGGATACCATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGAGA
GCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTGTTTAGGTG
ATGTCACCAGACACCTGTTCCCCCACCAGCCTCACTCCCCATCCCAACCAGAGATGGCTC
ACTTCGGATCGAGGGCGGACTACATCTCATCATCTCGCGAATCTGCTGTAATATAAGACG
ACAGCTTTTAAATGTGTATATATATATCCCATGATTTTGGGTTTTTGTTTTGTTTTGTTT
TTCTTGATGGTTTCCCTTCCTCTTCTCTCTTACCCCTTCTCCTTTGAAATCTCTTTGAAT
CACATTTGGTAGTGATTTTGACTTAGTCCAGTAGTCGTAGAGCTTTAATATCTAGTTCAA
AGCTAACCATAGTATACTTGTTATCTTAAGGTATTTTTTTTTTTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTGCTGATGTTTGATAAGACGACCAACAGGCACAGAGGGTTTGGCTTTGTCACTTTT
GAGAATGAAGATGTGGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAATAAA
ATGGTGGAATGTAAGAAAGCTCAGCCGAAGGAAGTCATGTTCCCACCTGGGACAAGAAGC
CGGGCCCGGGGACTGCCTTACACCATGGATGCGTTCATGCTTGGCATGGGGATGCTGGGC
TACCCCAACTTCGTGGCGACCTATGGCCGCGGCTACCCCGGATTTGCTCCTAGCTATGGC
TATCAGTTCCCAGGCTTCCCGGCAGCGGCTTACTGACCAGTGGCAGCGGCGGCAGTGGCG
GCTAGCCAGAGGATCAGTCCTGAATAGCTACAGTGCTCAACCGAATTTTGGCGCGCCCGC
TTCCCCGGCAGGCTCCAACCCCGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAAG
ACCTGTCGCCGATCTCTATGGCCCTGCCATCCAGGACTCCGGAGTGGGGAATTACATAAG
TGCTGCCAGCCCACAGCCGGGCTCGGGCTTCTGCCACGGCATAGCTGGACCTTTGATTGC
AACGGCCTTTACAAATGGATACCATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGAGA
GCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTGTTTAGGTG
ATGTCACCAGACACCTGTTCCCCCACCAGCCTCACTCCCCATCCCAACCAGAGATGGCTC
ACTTCGGATCGAGGGCGGACTACATCTCATCATCTCGCGAATCTGCTGTAATATAAGACG
ACAGCTTTTAAATGTGTATATATATATCCCATGATTTTGGGTTTTTGTTTTGTTTTGTTT
TTCTTGATGGTTTCCCTTCCTCTTCTCTCTTACCCCTTCTCCTTTGAAATCTCTTTGAAT
CACATTTGGTAGTGATTTTGACTTAGTCCAGTAGTCGTAGAGCTTTAATATCTAGTTCAA
AGCTAACCATAGTATACTTGTTATCTTAAGGTATTTTTTTTTTTCTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31417000|gb|AAH17560.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31417000|gb|AAH17560.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               658-776, - strand, RNAz p=0.781789

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               658-776, - strand, RNAz p=0.781789

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               123-239, gnl|bosTau2|chr19 (3989661-3989545)
               

               
               123-239, gnl|Hg17|chr17 (53048329-53048445)
               

               
               123-239, gnl|Mm7|chr11 (88464588-88464472)
               


               
               375-585, gnl|bosTau2|chr19 (3940474-3940264)
               

               
               375-585, gnl|Hg17|chr17 (53107275-53107485)
               

               
               375-585, gnl|Mm7|chr11 (88418903-88418693)
               


               
               658-1068, gnl|bosTau2|chr19 (3936103-3935701)
               

               
               658-1068, gnl|Hg17|chr17 (53111907-53112307)
               

               
               658-1068, gnl|Mm7|chr11 (88414570-88414151)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-239, gnl|bosTau2|chr19 (3989661-3989545)
               

               
               123-239, gnl|Hg17|chr17 (53048329-53048445)
               

               
               123-239, gnl|Mm7|chr11 (88464588-88464472)
               


               
               375-585, gnl|bosTau2|chr19 (3940474-3940264)
               

               
               375-585, gnl|Hg17|chr17 (53107275-53107485)
               

               
               375-585, gnl|Mm7|chr11 (88418903-88418693)
               


               
               658-1068, gnl|bosTau2|chr19 (3936103-3935701)
               

               
               658-1068, gnl|Hg17|chr17 (53111907-53112307)
               

               
               658-1068, gnl|Mm7|chr11 (88414570-88414151)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               hlv (0.139256)

	123-239, gnl\|bosTau2\|chr19 (3989661-3989545)
	123-239, gnl\|Hg17\|chr17 (53048329-53048445)
	123-239, gnl\|Mm7\|chr11 (88464588-88464472)

	375-585, gnl\|bosTau2\|chr19 (3940474-3940264)
	375-585, gnl\|Hg17\|chr17 (53107275-53107485)
	375-585, gnl\|Mm7\|chr11 (88418903-88418693)

	658-1068, gnl\|bosTau2\|chr19 (3936103-3935701)
	658-1068, gnl\|Hg17\|chr17 (53111907-53112307)
	658-1068, gnl\|Mm7\|chr11 (88414570-88414151)