Non-Coding RNA Search

Ss1.1-rhlv18b_g22.5

Sequence:


               
               CAAAATGTAAGCCACCACCCTGAGACCTTGATGTCTTCATTTACAACGCATCTGCAGTTC
TGTCAGCCCTGAATCCGTTTGTGTTAAGCTGCGGAGGAAAACCCATGTCTTGTTTATTAC
CTATACGGTTATTTTAATGACATTTAAATAGGTATATTTTTTCAACCACTGATTACTTTT
CAGGAACTTAATTATTTCCAAATAAATTTCTTTATTTTATATTGTACATGAAAAGTTTTT
AAGATATGTTTAAGACCAAGAATATTGAAATGATTTTAAAAGTTGTGGGAGACGCCAGTA
GCAATATCTAGGGGGATTTGCATTGAGACTATTGTATTTTCCACTAGCAGTGAAAATGAT
CTTTCAACCCTAACTTGTAAATATATTTTAATCATTAATTGTTTTTTTTTTCCCCTCTAG
TCCATTTTTATTTGGACATCCACCACAATTTAAATTTTATCGATGCCCTCAGAATTCACT
GCAGCAGCGGGATACGTAGCAAAAATGCAGAGGTGAACAGGAAATAAAATTTCTGGCTTT
TCTGCTGTAAATAAACGGAAAGAAAATGACTAAAATCAAGTAAAACTAACACATATAATT
TGATTGACAATAAACTATTTACCATCACATATGCTGCGCTGTTTTTAAGAAACATGATGT
AATTCATTCACACGTTAATCGTGCTGCAGAAATTTGCAGTCTGCACCTTATGGGTCACGA
TTACCTTTAGCCTTTTTTTTTTTTTTTTCTTTTTTTGTAATAATTGTAGCCAAGTAAATC
TCCAATAAAGTTATGGTCTGTTCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAATGTAAGCCACCACCCTGAGACCTTGATGTCTTCATTTACAACGCATCTGCAGTTC
TGTCAGCCCTGAATCCGTTTGTGTTAAGCTGCGGAGGAAAACCCATGTCTTGTTTATTAC
CTATACGGTTATTTTAATGACATTTAAATAGGTATATTTTTTCAACCACTGATTACTTTT
CAGGAACTTAATTATTTCCAAATAAATTTCTTTATTTTATATTGTACATGAAAAGTTTTT
AAGATATGTTTAAGACCAAGAATATTGAAATGATTTTAAAAGTTGTGGGAGACGCCAGTA
GCAATATCTAGGGGGATTTGCATTGAGACTATTGTATTTTCCACTAGCAGTGAAAATGAT
CTTTCAACCCTAACTTGTAAATATATTTTAATCATTAATTGTTTTTTTTTTCCCCTCTAG
TCCATTTTTATTTGGACATCCACCACAATTTAAATTTTATCGATGCCCTCAGAATTCACT
GCAGCAGCGGGATACGTAGCAAAAATGCAGAGGTGAACAGGAAATAAAATTTCTGGCTTT
TCTGCTGTAAATAAACGGAAAGAAAATGACTAAAATCAAGTAAAACTAACACATATAATT
TGATTGACAATAAACTATTTACCATCACATATGCTGCGCTGTTTTTAAGAAACATGATGT
AATTCATTCACACGTTAATCGTGCTGCAGAAATTTGCAGTCTGCACCTTATGGGTCACGA
TTACCTTTAGCCTTTTTTTTTTTTTTTTCTTTTTTTGTAATAATTGTAGCCAAGTAAATC
TCCAATAAAGTTATGGTCTGTTCAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr21 (40011629-40012436)
               

               
               1-804, gnl|Hg17|chr14 (94623100-94622318)
               

               
               1-804, gnl|Mm7|chr12 (102182775-102182064)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr21 (40011629-40012436)
               

               
               1-804, gnl|Hg17|chr14 (94623100-94622318)
               

               
               1-804, gnl|Mm7|chr12 (102182775-102182064)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csk (0.140746)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               hlv (0.139256)

	1-804, gnl\|bosTau2\|chr21 (40011629-40012436)
	1-804, gnl\|Hg17\|chr14 (94623100-94622318)
	1-804, gnl\|Mm7\|chr12 (102182775-102182064)