Ss1.1-rhlv18b_j14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGGATTCTTCTCGGGGAGTAGCGCTGTGTCCTTTCCACCATGTCACCTAAGAAAGC CAAGAAGAGAGCAGATGGAGCCAATTCCAACGTGTTCTCCATGTTTGAACAGACCCAGAT TCAGGAATTTAAGGAGGCCTTCACCATCATGGACCAGAACAGGGATGGCTTCATAGACAA GAATGATCTGAGGGACACCTTTGCTGCTCTTGGGCGTGTGAACGTGAAAAATGAGGAAAT TGATGAAATGATCAAGGAAGCTCCAGGTCCAATTAACTTTACTGTGTTCCTAACGATGTT TGGGGAGAAACTTAAGGGGGCAGACCCTGAGGAGACCATCCTTAACGCGTTCAAAGTGTT TGACCCTGAAGGCAAAGGGGTGCTCAGGGCTGATTATGTAAAGGAGATGCTGACCACGCA GGCGGAGAGGTTTTCCAAGGAGGAGATTGAACAGATGTTCGCTGCCTTCCCCCCCGACGT GACCGGCAACTTGGACTATAAGAACCTGGTGCACATCATCACCCACGGAGAAGAGAAGGA CTAAGGGAGGGGCTTGCTGCCCGACCCTGGGCTTGCCTTTGGCCTGGGTACCTTGTAGAT ACCACATGGCTACATGGCCTGCAGATGCAAGTCCGTCCAACGACCATGTTCAAATAAACA GGAGGTCAAGTAAAAAAAAAAAAAAAAAAAAAAAAAGCAGCCTGGGTACCTTGTAGATAC CACATGGCTACATGGCCTGCAGATGCAAGTCCGTCCAACGACCATGTTCAAATAAACAGG AGGTCAAGTAAATTAGAACAAGACTTTCACAACCCCTCAGGACTACTTTTTTTCAGCAAG GGCCACATTTTACTAGAATGCTAACTAGAGGACCACAGGAGTTCCGTTGTGGCTCAGCAG GTTAAGAACCCAACATTATCTCTATGAGGATGCAGGTTCAATCCCTGGCCTCACTCAGTG GGTTAAGGATCTAGCATTGCCACAGCTGCAGTGTAAGTTGCAGGTGTGGCTTGGATCCAG CATTGCTGCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGGATTCTTCTCGGGGAGTAGCGCTGTGTCCTTTCCACCATGTCACCTAAGAAAGC CAAGAAGAGAGCAGATGGAGCCAATTCCAACGTGTTCTCCATGTTTGAACAGACCCAGAT TCAGGAATTTAAGGAGGCCTTCACCATCATGGACCAGAACAGGGATGGCTTCATAGACAA GAATGATCTGAGGGACACCTTTGCTGCTCTTGGGCGTGTGAACGTGAAAAATGAGGAAAT TGATGAAATGATCAAGGAAGCTCCAGGTCCAATTAACTTTACTGTGTTCCTAACGATGTT TGGGGAGAAACTTAAGGGGGCAGACCCTGAGGAGACCATCCTTAACGCGTTCAAAGTGTT TGACCCTGAAGGCAAAGGGGTGCTCAGGGCTGATTATGTAAAGGAGATGCTGACCACGCA GGCGGAGAGGTTTTCCAAGGAGGAGATTGAACAGATGTTCGCTGCCTTCCCCCCCGACGT GACCGGCAACTTGGACTATAAGAACCTGGTGCACATCATCACCCACGGAGAAGAGAAGGA CTAAGGGAGGGGCTTGCTGCCCGACCCTGGGCTTGCCTTTGGCCTGGGTACCTTGTAGAT ACCACATGGCTACATGGCCTGCAGATGCAAGTCCGTCCAACGACCATGTTCAAATAAACA GGAGGTCAAGTAAAAAAAAAAAAAAAAAAAAAAAAAGCAGCCTGGGTACCTTGTAGATAC CACATGGCTACATGGCCTGCAGATGCAAGTCCGTCCAACGACCATGTTCAAATAAACAGG AGGTCAAGTAAATTAGAACAAGACTTTCACAACCCCTCAGGACTACTTTTTTTCAGCAAG GGCCACATTTTACTAGAATGCTAACTAGAGGACCACAGGAGTTCCGTTGTGGCTCAGCAG GTTAAGAACCCAACATTATCTCTATGAGGATGCAGGTTCAATCCCTGGCCTCACTCAGTG GGTTAAGGATCTAGCATTGCCACAGCTGCAGTGTAAGTTGCAGGTGTGGCTTGGATCCAG CATTGCTGCAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 53-197, gnl|bosTau2|chr13 (44684877-44685021) | |
| 53-197, gnl|canFam2|chr24 (28297362-28297596) | |
| 53-197, gnl|canFam2|chr3 (64644407-64644242) | |
| 53-197, gnl|canFam2|chrX (43963532-43963312) | |
| 53-197, gnl|danRer3|chr2 (22846396-22846238) | |
| 53-197, gnl|danRer3|chrNA (133814465-133814643) | |
| 53-197, gnl|danRer3|chrNA (133814641-133814432) | |
| 53-197, gnl|dasNov1|scaffold_3223 (94283-94464) | |
| 53-197, gnl|dasNov1|scaffold_3223 (94472-94313) | |
| 53-197, gnl|dasNov1|scaffold_3223 (94475-94280) | |
| 53-197, gnl|echTel1|scaffold_309793 (3742-3584) | |
| 53-197, gnl|echTel1|scaffold_309793 (3575-3734) | |
| 53-197, gnl|echTel1|scaffold_309793 (3565-3766) | |
| 53-197, gnl|fr1|chrUn (192013920-192014114) | |
| 53-197, gnl|fr1|chrUn (3094661-3094820) | |
| 53-197, gnl|fr1|chrUn (192014119-192013898) | |
| 53-197, gnl|galGal2|chr20 (378986-378806) | |
| 53-197, gnl|galGal2|chr20 (378975-378770) | |
| 53-197, gnl|hg17|chr12 (7914703-7914873) | |
| 53-197, gnl|hg17|chr20 (34606684-34606909) | |
| 53-197, gnl|Hg17|chr20 (34606726-34606870) | |
| 53-197, gnl|hg17|chr8 (42105760-42105966) | |
| 53-197, gnl|loxAfr1|scaffold_75495 (2435-2275) | |
| 53-197, gnl|loxAfr1|scaffold_75495 (2269-2426) | |
| 53-197, gnl|loxAfr1|scaffold_75495 (2269-2461) | |
| 53-197, gnl|mm7|chr2 (156519618-156519399) | |
| 53-197, gnl|mm7|chr2 (156519423-156519588) | |
| 53-197, gnl|mm7|chr2 (156519417-156519638) | |
| 53-197, gnl|Mm7|chr2 (156519459-156519603) | |
| 53-197, gnl|monDom2|scaffold_6 (88260612-88260823) | |
| 53-197, gnl|monDom2|scaffold_6 (88260807-88260642) | |
| 53-197, gnl|monDom2|scaffold_6 (10432571-10432352) | |
| 53-197, gnl|oryCun1|scaffold_203887 (130132-130360) | |
| 53-197, gnl|oryCun1|scaffold_215277 (49831-49666) | |
| 53-197, gnl|oryCun1|scaffold_215277 (49837-49614) | |
| 53-197, gnl|panTro1|chr10 (8455421-8455591) | |
| 53-197, gnl|panTro1|chr21 (36843497-36843722) | |
| 53-197, gnl|panTro1|chr7 (43524200-43524406) | |
| 53-197, gnl|rheMac2|chr10 (27951827-27951603) | |
| 53-197, gnl|rheMac2|chr11 (8180657-8180822) | |
| 53-197, gnl|rheMac2|chr8 (42705161-42705342) | |
| 53-197, gnl|rn3|chr3 (147096359-147096141) | |
| 53-197, gnl|rn3|chr3 (147096164-147096329) | |
| 53-197, gnl|rn3|chr3 (147096158-147096381) | |
| 53-197, gnl|tetNig1|chrUn_random (43292710-43292905) | |
| 53-197, gnl|tetNig1|chrUn_random (43292905-43292740) | |
| 53-197, gnl|tetNig1|chrUn_random (43292905-43292707) | |
| 53-197, gnl|xenTro1|scaffold_345 (1221996-1222190) | |
| 53-197, gnl|xenTro1|scaffold_345 (1222170-1222005) | |
| 53-197, gnl|xenTro1|scaffold_345 (1222170-1221972) | |
| 204-318, gnl|bosTau2|chr17 (29856556-29856670) | |
| 204-318, gnl|canFam2|chr26 (11645372-11645490) | |
| 204-318, gnl|danRer3|chr10 (29312856-29312974) | |
| 204-318, gnl|dasNov1|scaffold_30596 (11224-11109) | |
| 204-318, gnl|echTel1|scaffold_303397 (12848-12737) | |
| 204-318, gnl|fr1|chrUn (56471650-56471768) | |
| 204-318, gnl|galGal2|chr15 (5986663-5986778) | |
| 204-318, gnl|hg17|chr12 (109814703-109814821) | |
| 204-318, gnl|Hg17|chr12 (109814823-109814709) | |
| 204-318, gnl|loxAfr1|scaffold_36933 (14378-14478) | |
| 204-318, gnl|mm7|chr5 (121338203-121338090) | |
| 204-318, gnl|Mm7|chr5 (121338084-121338198) | |
| 204-318, gnl|monDom2|scaffold_97 (397140-397025) | |
| 204-318, gnl|oryCun1|scaffold_200972 (14031-14120) | |
| 204-318, gnl|panTro1|chr10 (112387758-112387876) | |
| 204-318, gnl|rheMac2|chr11 (111847204-111847322) | |
| 204-318, gnl|rn3|chr1 (186623523-186623412) | |
| 204-318, gnl|tetNig1|chr12 (11629787-11629904) | |
| 444-557, gnl|bosTau2|chr17 (29859121-29859234) | |
| 444-557, gnl|Hg17|chr12 (109811701-109811589) | |
| 444-557, gnl|Mm7|chr5 (121340931-121341032) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-197, gnl|bosTau2|chr13 (44684877-44685021) | |
| 53-197, gnl|canFam2|chr24 (28297362-28297596) | |
| 53-197, gnl|canFam2|chr3 (64644407-64644242) | |
| 53-197, gnl|canFam2|chrX (43963532-43963312) | |
| 53-197, gnl|danRer3|chr2 (22846396-22846238) | |
| 53-197, gnl|danRer3|chrNA (133814465-133814643) | |
| 53-197, gnl|danRer3|chrNA (133814641-133814432) | |
| 53-197, gnl|dasNov1|scaffold_3223 (94283-94464) | |
| 53-197, gnl|dasNov1|scaffold_3223 (94472-94313) | |
| 53-197, gnl|dasNov1|scaffold_3223 (94475-94280) | |
| 53-197, gnl|echTel1|scaffold_309793 (3742-3584) | |
| 53-197, gnl|echTel1|scaffold_309793 (3575-3734) | |
| 53-197, gnl|echTel1|scaffold_309793 (3565-3766) | |
| 53-197, gnl|fr1|chrUn (192013920-192014114) | |
| 53-197, gnl|fr1|chrUn (3094661-3094820) | |
| 53-197, gnl|fr1|chrUn (192014119-192013898) | |
| 53-197, gnl|galGal2|chr20 (378986-378806) | |
| 53-197, gnl|galGal2|chr20 (378975-378770) | |
| 53-197, gnl|hg17|chr12 (7914703-7914873) | |
| 53-197, gnl|hg17|chr20 (34606684-34606909) | |
| 53-197, gnl|Hg17|chr20 (34606726-34606870) | |
| 53-197, gnl|hg17|chr8 (42105760-42105966) | |
| 53-197, gnl|loxAfr1|scaffold_75495 (2435-2275) | |
| 53-197, gnl|loxAfr1|scaffold_75495 (2269-2426) | |
| 53-197, gnl|loxAfr1|scaffold_75495 (2269-2461) | |
| 53-197, gnl|mm7|chr2 (156519618-156519399) | |
| 53-197, gnl|mm7|chr2 (156519423-156519588) | |
| 53-197, gnl|mm7|chr2 (156519417-156519638) | |
| 53-197, gnl|Mm7|chr2 (156519459-156519603) | |
| 53-197, gnl|monDom2|scaffold_6 (88260612-88260823) | |
| 53-197, gnl|monDom2|scaffold_6 (88260807-88260642) | |
| 53-197, gnl|monDom2|scaffold_6 (10432571-10432352) | |
| 53-197, gnl|oryCun1|scaffold_203887 (130132-130360) | |
| 53-197, gnl|oryCun1|scaffold_215277 (49831-49666) | |
| 53-197, gnl|oryCun1|scaffold_215277 (49837-49614) | |
| 53-197, gnl|panTro1|chr10 (8455421-8455591) | |
| 53-197, gnl|panTro1|chr21 (36843497-36843722) | |
| 53-197, gnl|panTro1|chr7 (43524200-43524406) | |
| 53-197, gnl|rheMac2|chr10 (27951827-27951603) | |
| 53-197, gnl|rheMac2|chr11 (8180657-8180822) | |
| 53-197, gnl|rheMac2|chr8 (42705161-42705342) | |
| 53-197, gnl|rn3|chr3 (147096359-147096141) | |
| 53-197, gnl|rn3|chr3 (147096164-147096329) | |
| 53-197, gnl|rn3|chr3 (147096158-147096381) | |
| 53-197, gnl|tetNig1|chrUn_random (43292710-43292905) | |
| 53-197, gnl|tetNig1|chrUn_random (43292905-43292740) | |
| 53-197, gnl|tetNig1|chrUn_random (43292905-43292707) | |
| 53-197, gnl|xenTro1|scaffold_345 (1221996-1222190) | |
| 53-197, gnl|xenTro1|scaffold_345 (1222170-1222005) | |
| 53-197, gnl|xenTro1|scaffold_345 (1222170-1221972) | |
| 204-318, gnl|bosTau2|chr17 (29856556-29856670) | |
| 204-318, gnl|canFam2|chr26 (11645372-11645490) | |
| 204-318, gnl|danRer3|chr10 (29312856-29312974) | |
| 204-318, gnl|dasNov1|scaffold_30596 (11224-11109) | |
| 204-318, gnl|echTel1|scaffold_303397 (12848-12737) | |
| 204-318, gnl|fr1|chrUn (56471650-56471768) | |
| 204-318, gnl|galGal2|chr15 (5986663-5986778) | |
| 204-318, gnl|hg17|chr12 (109814703-109814821) | |
| 204-318, gnl|Hg17|chr12 (109814823-109814709) | |
| 204-318, gnl|loxAfr1|scaffold_36933 (14378-14478) | |
| 204-318, gnl|mm7|chr5 (121338203-121338090) | |
| 204-318, gnl|Mm7|chr5 (121338084-121338198) | |
| 204-318, gnl|monDom2|scaffold_97 (397140-397025) | |
| 204-318, gnl|oryCun1|scaffold_200972 (14031-14120) | |
| 204-318, gnl|panTro1|chr10 (112387758-112387876) | |
| 204-318, gnl|rheMac2|chr11 (111847204-111847322) | |
| 204-318, gnl|rn3|chr1 (186623523-186623412) | |
| 204-318, gnl|tetNig1|chr12 (11629787-11629904) | |
| 444-557, gnl|bosTau2|chr17 (29859121-29859234) | |
| 444-557, gnl|Hg17|chr12 (109811701-109811589) | |
| 444-557, gnl|Mm7|chr5 (121340931-121341032) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| hlv (29.9401) | |
| hea (27.4029) | |
| ssp (26.8329) | |
| che (11.3141) | |
| ldo (9.79726) | |
| mas (6.94006) | |
| ste (5.54354) | |
| vin (4.6558) | |
| nms (4.27716) | |
| ese (2.78305) | |
| isp (1.95489) | |
| bfe (1.49858) | |
| nep (1.4714) | |
| sme (1.22175) | |
| eye (1.19352) | |
| eru (0.960384) | |
| cst (0.560146) | |
| tbr (0.462535) | |
| col (0.390016) | |
| ctl (0.306138) | |
| pty (0.285429) | |
| nca (0.273748) | |
| mgp (0.230681) | |
| jca (0.22792) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (29.9401) | |
| hea (27.4029) | |
| ssp (26.8329) | |
| che (11.3141) | |
| ldo (9.79726) | |
| mas (6.94006) | |
| ste (5.54354) | |
| vin (4.6558) | |
| nms (4.27716) | |
| ese (2.78305) | |
| isp (1.95489) | |
| bfe (1.49858) | |
| nep (1.4714) | |
| sme (1.22175) | |
| eye (1.19352) | |
| eru (0.960384) | |
| cst (0.560146) | |
| tbr (0.462535) | |
| col (0.390016) | |
| ctl (0.306138) | |
| pty (0.285429) | |
| nca (0.273748) | |
| mgp (0.230681) | |
| jca (0.22792) |