Ss1.1-rhlv18b_j6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGCTGGGTGTATTGGGGTGGCCCGCGAGGGTGTTAGTCACTGCGTCGCCCAGTCTGCG GGCGTGACTGTGCCGCTCGCCGGGTGGTTACATCGAGGCGCAGGTGGCCTCAGGCCGGCG GCGCGGGTTTACCTTGGTTCGCCGGTCCCAAGGTCGCTGAGTGGCCGCGATGTCGATTTT CACCCCCACCAACCAGATACGCCTGACCAATGTGGCTGTGGTACGGATGAAGCGAGCCGG GAAGCGCTTTGAAATCGCCTGCTACAAAAATAAGGTCGTCGGCTGGCGGAGCGGCGTGGA AAAAGATCTTGATGAAGTTCTACAGACCCACTCAGTGTTTGTAAATGTTTCTAAAGGTCA AGTTGCAAAGAAGGAAGATCTCATCAGTGCATTTGGAACAGATGACCAGACTGAAATCTG TAAGCAGATTTTGACTAAAGGAGAGGTTCAGGTGTCTGATAAAGAACGACATACACAGCT GGAGCAGATGTTTAGGGACATTGCAACTATTGTGGCTGACAAATGTGTGAACCCTGAAAC AAAGAGACCGTACACTGTCATCCTTATCGAGAGAGCCATGAAGGACATCCACTATTCAGT CAAACCCAACAAGAGTACAAAACAGCAGGCTTTGGAAGTGATAAAGCAGTTGAAGGAGAA CATGAAGATAGAACGTGCTCACATGAGACTGCGGTTCATTCTTCCAGTGAACGAAGGGAA GAAGCTGAAAGAAAAGCTCAAGCCTCTGATCAAGGTTATTGAAAGTGAAGACTACGGTCA ACAGCTGGAAATTGTGTGTCTCATCGACCCCGGCTGCTTCAGAGAAATCGATGAGCTGAT AAAAAAGGAGACGAAAGGCAAAGGTTCTTTGGAGGTGCTCAACCTGAAAGATGTCGAAGA AGGAGATGAGAAATTCGAGTGACAGTCTCCAGTGTCTTCAGCTGGCCAACACTAAAGCGT TTTCGTTTCCCACAATCCTGTTTTCTTTCTGTGATCTGCCAAAAACTTGCTCGGAAGGTT TGATGTTTTTCCATCTTTGTGGCAAACATGTATTCAAAAAGACTTTCCTAAGTAAGTGTT ATAATGTGGGATTGATGTAGTTTTAATTATAAAACGGGGTTTTAGGCAAAAGTGAAAAAT CTAAGATAAAGCCCGGAGTAGCATCTCGTTGCTGCCGTAGGCCTTTGTAGCTTTCCAGGG TGAAAGTCATTCCAGACAACCCTTGTGGATAAAAAGTACATTGTACACTGGGAGGATGTA TCTGTATGACAGAAAGGAAGTATTTGCCAGAAAAGAAAATACAGAGTGTCTAATTCCTAC CTAAAAGAAACTCGTGTATGGGGGAACTCTGTCGTGACATCGTGACCTAATAGAAAGCCT GGATGGTAACTTCCTGATTATCTGAAAAATAGATGTATGATGAGTGAGCAGGACTTAAAT AATATTCATCAGACATGCTGCCATAACCTAGATTATAGTCATTTTTAATTCTCAAAGTTT ATAATATATATTACTAGAGCTGAAATTATATGCAATCAATAAAACCACTTTTTATTTTTG TTAAACTATGGCTTGTATTTCTAGACAGCTTCCTAACTCCCTTTCTTTTCTCTGCTTCTT GTTTGGTAGGATTGGAGAGTTCTTAGCAGGACTTAATTCAGTATGAGGAATGCTCAGAAC AGGGCCTGTTCTGTTAAATACCTGGTAAATCTTAGCTACTATTATCTGAGATATAGTTGA ACTTAAGTATTTTAGTATTTGAACACTTAAATAGACAGTGTGCAAGTTTTTCAAAATCTC CTTTTCTTTGGAGTTCCTGCTGTGGTGCAGCGGGATGAGCAGCGAGCATCTCTGGAGCAC TGGGACTCAGGTTCAGTTCCCAGCCCGGCACAGTAAGTTCAGGATCCAGCGTTGCCACGG TTGCAGCGTAGGTTGAAACCTCAGACCCGAGAAGTCCATGTGCCATGGGGCAGCCAAAAA AGAAAAAAAATCTATTTGTCTTCAAAAGAGATAGTGTAGAATACAGAGTAGGGCTTCACT CAAAATGACCATGCAGATGTATTTCGTGGACAGCAGTTTTCAAATGAAAAAAGAGTTCTT CCCTTGAACAGGTTCTGATTGGTTTTCTAAGCACATAGAATTTGCTGCTAATTCAAGTTC CCAGAAATGCCCCTTTTACAATAATTTCAATAGATATTATGAAGTCAGAATTTTTTCTCT TCATGTTCGAAGCGTTCTGGTTTGATAATTTGGGAATACGCACTGGTGTGAATGCCGAAA TTGAACTGTTTTGATAACAATCTCTAAGTAACCCCCTCACTGGTTCCATTTTACTTAGAC AGTTTATTGTTTGACAAAGTAATCTAAATTTGAAGTCCCGGGAAATAATTTTAACCGGTG AGGTTTATACTTTATTTCTAGCCACAACAGTGAGAGCAGTGTTTCAGGTTGAAAGTGGTA ATTGCTAAAAAATGTTCAAGGGCTGCATCTCCAGCAGAAAAGGAGAAGGTTTCGCCAGCA TTGCCTTAAGTTTCTCCCATCCTCATACTCATGTCTTCTAAAGCCGGAACCTCAAGGAGT GTCAAATGTAGATCCATCTGAGTCATGTTCCTGAACCTATAAAAAATAAAAAAATTTACC TTCTACTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGCTGGGTGTATTGGGGTGGCCCGCGAGGGTGTTAGTCACTGCGTCGCCCAGTCTGCG GGCGTGACTGTGCCGCTCGCCGGGTGGTTACATCGAGGCGCAGGTGGCCTCAGGCCGGCG GCGCGGGTTTACCTTGGTTCGCCGGTCCCAAGGTCGCTGAGTGGCCGCGATGTCGATTTT CACCCCCACCAACCAGATACGCCTGACCAATGTGGCTGTGGTACGGATGAAGCGAGCCGG GAAGCGCTTTGAAATCGCCTGCTACAAAAATAAGGTCGTCGGCTGGCGGAGCGGCGTGGA AAAAGATCTTGATGAAGTTCTACAGACCCACTCAGTGTTTGTAAATGTTTCTAAAGGTCA AGTTGCAAAGAAGGAAGATCTCATCAGTGCATTTGGAACAGATGACCAGACTGAAATCTG TAAGCAGATTTTGACTAAAGGAGAGGTTCAGGTGTCTGATAAAGAACGACATACACAGCT GGAGCAGATGTTTAGGGACATTGCAACTATTGTGGCTGACAAATGTGTGAACCCTGAAAC AAAGAGACCGTACACTGTCATCCTTATCGAGAGAGCCATGAAGGACATCCACTATTCAGT CAAACCCAACAAGAGTACAAAACAGCAGGCTTTGGAAGTGATAAAGCAGTTGAAGGAGAA CATGAAGATAGAACGTGCTCACATGAGACTGCGGTTCATTCTTCCAGTGAACGAAGGGAA GAAGCTGAAAGAAAAGCTCAAGCCTCTGATCAAGGTTATTGAAAGTGAAGACTACGGTCA ACAGCTGGAAATTGTGTGTCTCATCGACCCCGGCTGCTTCAGAGAAATCGATGAGCTGAT AAAAAAGGAGACGAAAGGCAAAGGTTCTTTGGAGGTGCTCAACCTGAAAGATGTCGAAGA AGGAGATGAGAAATTCGAGTGACAGTCTCCAGTGTCTTCAGCTGGCCAACACTAAAGCGT TTTCGTTTCCCACAATCCTGTTTTCTTTCTGTGATCTGCCAAAAACTTGCTCGGAAGGTT TGATGTTTTTCCATCTTTGTGGCAAACATGTATTCAAAAAGACTTTCCTAAGTAAGTGTT ATAATGTGGGATTGATGTAGTTTTAATTATAAAACGGGGTTTTAGGCAAAAGTGAAAAAT CTAAGATAAAGCCCGGAGTAGCATCTCGTTGCTGCCGTAGGCCTTTGTAGCTTTCCAGGG TGAAAGTCATTCCAGACAACCCTTGTGGATAAAAAGTACATTGTACACTGGGAGGATGTA TCTGTATGACAGAAAGGAAGTATTTGCCAGAAAAGAAAATACAGAGTGTCTAATTCCTAC CTAAAAGAAACTCGTGTATGGGGGAACTCTGTCGTGACATCGTGACCTAATAGAAAGCCT GGATGGTAACTTCCTGATTATCTGAAAAATAGATGTATGATGAGTGAGCAGGACTTAAAT AATATTCATCAGACATGCTGCCATAACCTAGATTATAGTCATTTTTAATTCTCAAAGTTT ATAATATATATTACTAGAGCTGAAATTATATGCAATCAATAAAACCACTTTTTATTTTTG TTAAACTATGGCTTGTATTTCTAGACAGCTTCCTAACTCCCTTTCTTTTCTCTGCTTCTT GTTTGGTAGGATTGGAGAGTTCTTAGCAGGACTTAATTCAGTATGAGGAATGCTCAGAAC AGGGCCTGTTCTGTTAAATACCTGGTAAATCTTAGCTACTATTATCTGAGATATAGTTGA ACTTAAGTATTTTAGTATTTGAACACTTAAATAGACAGTGTGCAAGTTTTTCAAAATCTC CTTTTCTTTGGAGTTCCTGCTGTGGTGCAGCGGGATGAGCAGCGAGCATCTCTGGAGCAC TGGGACTCAGGTTCAGTTCCCAGCCCGGCACAGTAAGTTCAGGATCCAGCGTTGCCACGG TTGCAGCGTAGGTTGAAACCTCAGACCCGAGAAGTCCATGTGCCATGGGGCAGCCAAAAA AGAAAAAAAATCTATTTGTCTTCAAAAGAGATAGTGTAGAATACAGAGTAGGGCTTCACT CAAAATGACCATGCAGATGTATTTCGTGGACAGCAGTTTTCAAATGAAAAAAGAGTTCTT CCCTTGAACAGGTTCTGATTGGTTTTCTAAGCACATAGAATTTGCTGCTAATTCAAGTTC CCAGAAATGCCCCTTTTACAATAATTTCAATAGATATTATGAAGTCAGAATTTTTTCTCT TCATGTTCGAAGCGTTCTGGTTTGATAATTTGGGAATACGCACTGGTGTGAATGCCGAAA TTGAACTGTTTTGATAACAATCTCTAAGTAACCCCCTCACTGGTTCCATTTTACTTAGAC AGTTTATTGTTTGACAAAGTAATCTAAATTTGAAGTCCCGGGAAATAATTTTAACCGGTG AGGTTTATACTTTATTTCTAGCCACAACAGTGAGAGCAGTGTTTCAGGTTGAAAGTGGTA ATTGCTAAAAAATGTTCAAGGGCTGCATCTCCAGCAGAAAAGGAGAAGGTTTCGCCAGCA TTGCCTTAAGTTTCTCCCATCCTCATACTCATGTCTTCTAAAGCCGGAACCTCAAGGAGT GTCAAATGTAGATCCATCTGAGTCATGTTCCTGAACCTATAAAAAATAAAAAAATTTACC TTCTACTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1577-1675, - strand, RNAz p=0.892561 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1577-1675, - strand, RNAz p=0.892561 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 34-298, gnl|bosTau2|chr25 (24189391-24189659) | |
| 34-298, gnl|Hg17|chr7 (65904694-65904426) | |
| 34-298, gnl|Mm7|chr5 (129493273-129493032) | |
| 426-629, gnl|bosTau2|chr25 (24191109-24191312) | |
| 426-629, gnl|canFam2|chr6 (4261122-4261331) | |
| 426-629, gnl|danRer3|chr15 (1641770-1641561) | |
| 426-629, gnl|dasNov1|scaffold_82577 (4306-4097) | |
| 426-629, gnl|echTel1|scaffold_165919 (1235-1021) | |
| 426-629, gnl|galGal2|chr19 (628968-629177) | |
| 426-629, gnl|hg17|chr7 (65902348-65902557) | |
| 426-629, gnl|Hg17|chr7 (65902556-65902353) | |
| 426-629, gnl|loxAfr1|scaffold_4455 (12624-12415) | |
| 426-629, gnl|mm7|chr5 (129488631-129488840) | |
| 426-629, gnl|Mm7|chr5 (129488839-129488636) | |
| 426-629, gnl|monDom2|scaffold_81 (915535-915744) | |
| 426-629, gnl|oryCun1|scaffold_154382 (13544-13335) | |
| 426-629, gnl|panTro1|chr6_random (49094438-49094647) | |
| 426-629, gnl|rn3|chr12 (27324691-27324482) | |
| 426-629, gnl|tetNig1|chr16 (6295984-6296191) | |
| 426-629, gnl|xenTro1|scaffold_63 (1266576-1266782) | |
| 794-1806, gnl|bosTau2|chr25 (24193176-24194234) | |
| 794-1806, gnl|Hg17|chr7 (65897636-65896315) | |
| 1987-2649, gnl|bosTau2|chr25 (24194221-24194900) | |
| 1987-2649, gnl|Hg17|chr7 (65896608-65895508) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-298, gnl|bosTau2|chr25 (24189391-24189659) | |
| 34-298, gnl|Hg17|chr7 (65904694-65904426) | |
| 34-298, gnl|Mm7|chr5 (129493273-129493032) | |
| 426-629, gnl|bosTau2|chr25 (24191109-24191312) | |
| 426-629, gnl|canFam2|chr6 (4261122-4261331) | |
| 426-629, gnl|danRer3|chr15 (1641770-1641561) | |
| 426-629, gnl|dasNov1|scaffold_82577 (4306-4097) | |
| 426-629, gnl|echTel1|scaffold_165919 (1235-1021) | |
| 426-629, gnl|galGal2|chr19 (628968-629177) | |
| 426-629, gnl|hg17|chr7 (65902348-65902557) | |
| 426-629, gnl|Hg17|chr7 (65902556-65902353) | |
| 426-629, gnl|loxAfr1|scaffold_4455 (12624-12415) | |
| 426-629, gnl|mm7|chr5 (129488631-129488840) | |
| 426-629, gnl|Mm7|chr5 (129488839-129488636) | |
| 426-629, gnl|monDom2|scaffold_81 (915535-915744) | |
| 426-629, gnl|oryCun1|scaffold_154382 (13544-13335) | |
| 426-629, gnl|panTro1|chr6_random (49094438-49094647) | |
| 426-629, gnl|rn3|chr12 (27324691-27324482) | |
| 426-629, gnl|tetNig1|chr16 (6295984-6296191) | |
| 426-629, gnl|xenTro1|scaffold_63 (1266576-1266782) | |
| 794-1806, gnl|bosTau2|chr25 (24193176-24194234) | |
| 794-1806, gnl|Hg17|chr7 (65897636-65896315) | |
| 1987-2649, gnl|bosTau2|chr25 (24194221-24194900) | |
| 1987-2649, gnl|Hg17|chr7 (65896608-65895508) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| hea (0.817996) | |
| tbr (0.616713) | |
| fat (0.58971) | |
| pro (0.512033) | |
| bla (0.497389) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| bfe (0.449573) | |
| amn (0.417711) | |
| che (0.408942) | |
| ssp (0.406559) | |
| ldo (0.38801) | |
| ova (0.387397) | |
| duo (0.345602) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| lun (0.300978) | |
| ski (0.29347) | |
| csk (0.281492) | |
| pla (0.267344) | |
| ute (0.265569) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| ctl (0.153069) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.817996) | |
| tbr (0.616713) | |
| fat (0.58971) | |
| pro (0.512033) | |
| bla (0.497389) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| bfe (0.449573) | |
| amn (0.417711) | |
| che (0.408942) | |
| ssp (0.406559) | |
| ldo (0.38801) | |
| ova (0.387397) | |
| duo (0.345602) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| lun (0.300978) | |
| ski (0.29347) | |
| csk (0.281492) | |
| pla (0.267344) | |
| ute (0.265569) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| ctl (0.153069) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| jej (0.0989218) |