Ss1.1-rhlv20b_m1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGACAGCGTGAAGAAGAAAGGAGAAAAGAGATAGAAAGACGAGAGGCAGCAAAACAGG AACTTGAAAGACAACGTCGTTTAGAATGGGAGAGAATTCGTAGACAGGAGCTTCTCAATC GAAGGAATAGAGAACAGGAAGAAATTGTCAGGTTAAACTCTAAAAAGAAGAGCCTTCATC TCGAGCTGGAAGCACTGAATGGCAAACATCAGCAGATCTCAGGCAGACTTCAAGATGTCC GACTCAGAAAGCAGACTCAAAAGACTGAGCTGGAAGTGCTGGATAAGCAATGTGACCTGG AAATTATGGAAATCAAGCAACTTCAACAGGAACTTCAGGAATATCAAAATAAGCTTATCT ATTTGGTACCAGAGAAGCAATTATTAAATGAAAGAATTAAAAACATGCAGCTCACTAACA CACCTGATTTAGGAATCAGTTTACTTCAAAAAAAATCATTAGAAAAGGAAGAATTATGCC AAAGACTTAAAGAACAATTAGATGCTCTTGAAAAAGAAACTGCATCTAAGCTGTCAGAAA TGGATTCATTTAACAATCAACTGAAGGAACTGAGAGAAAGCTACAATACACAGCAGTTAG CCCTTGAACAACTTTATAAGATCAAGCGTGACAAACTGAAGGAAATTGAAAGAAAAAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGACAGCGTGAAGAAGAAAGGAGAAAAGAGATAGAAAGACGAGAGGCAGCAAAACAGG AACTTGAAAGACAACGTCGTTTAGAATGGGAGAGAATTCGTAGACAGGAGCTTCTCAATC GAAGGAATAGAGAACAGGAAGAAATTGTCAGGTTAAACTCTAAAAAGAAGAGCCTTCATC TCGAGCTGGAAGCACTGAATGGCAAACATCAGCAGATCTCAGGCAGACTTCAAGATGTCC GACTCAGAAAGCAGACTCAAAAGACTGAGCTGGAAGTGCTGGATAAGCAATGTGACCTGG AAATTATGGAAATCAAGCAACTTCAACAGGAACTTCAGGAATATCAAAATAAGCTTATCT ATTTGGTACCAGAGAAGCAATTATTAAATGAAAGAATTAAAAACATGCAGCTCACTAACA CACCTGATTTAGGAATCAGTTTACTTCAAAAAAAATCATTAGAAAAGGAAGAATTATGCC AAAGACTTAAAGAACAATTAGATGCTCTTGAAAAAGAAACTGCATCTAAGCTGTCAGAAA TGGATTCATTTAACAATCAACTGAAGGAACTGAGAGAAAGCTACAATACACAGCAGTTAG CCCTTGAACAACTTTATAAGATCAAGCGTGACAAACTGAAGGAAATTGAAAGAAAAAGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 46-197, gnl|bosTau2|chr11 (56192781-56192932) | |
| 46-197, gnl|canFam2|chr17 (21690240-21690406) | |
| 46-197, gnl|danRer3|chr20 (27323421-27323263) | |
| 46-197, gnl|dasNov1|scaffold_4542 (22358-22192) | |
| 46-197, gnl|echTel1|scaffold_310207 (45674-45506) | |
| 46-197, gnl|fr1|chrUn (195218185-195218339) | |
| 46-197, gnl|galGal2|chr3 (102465252-102465415) | |
| 46-197, gnl|hg17|chr2 (24433183-24433352) | |
| 46-197, gnl|Hg17|chr2 (24433336-24433185) | |
| 46-197, gnl|loxAfr1|scaffold_9104 (34166-34000) | |
| 46-197, gnl|mm7|chr12 (4568051-4567885) | |
| 46-197, gnl|Mm7|chr12 (4567896-4568047) | |
| 46-197, gnl|monDom2|scaffold_29 (13981690-13981862) | |
| 46-197, gnl|oryCun1|scaffold_197397 (3709-3875) | |
| 46-197, gnl|panTro1|chr12 (25307187-25307357) | |
| 46-197, gnl|rheMac2|chr13 (24213166-24213333) | |
| 46-197, gnl|rn3|chrUn (42915249-42915419) | |
| 46-197, gnl|tetNig1|chr14 (6081909-6081754) | |
| 46-197, gnl|xenTro1|scaffold_226 (410433-410264) | |
| 426-567, gnl|bosTau2|chr11 (56200230-56200371) | |
| 426-567, gnl|Hg17|chr2 (24420872-24420731) | |
| 426-567, gnl|Mm7|chr12 (4571971-4572112) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-197, gnl|bosTau2|chr11 (56192781-56192932) | |
| 46-197, gnl|canFam2|chr17 (21690240-21690406) | |
| 46-197, gnl|danRer3|chr20 (27323421-27323263) | |
| 46-197, gnl|dasNov1|scaffold_4542 (22358-22192) | |
| 46-197, gnl|echTel1|scaffold_310207 (45674-45506) | |
| 46-197, gnl|fr1|chrUn (195218185-195218339) | |
| 46-197, gnl|galGal2|chr3 (102465252-102465415) | |
| 46-197, gnl|hg17|chr2 (24433183-24433352) | |
| 46-197, gnl|Hg17|chr2 (24433336-24433185) | |
| 46-197, gnl|loxAfr1|scaffold_9104 (34166-34000) | |
| 46-197, gnl|mm7|chr12 (4568051-4567885) | |
| 46-197, gnl|Mm7|chr12 (4567896-4568047) | |
| 46-197, gnl|monDom2|scaffold_29 (13981690-13981862) | |
| 46-197, gnl|oryCun1|scaffold_197397 (3709-3875) | |
| 46-197, gnl|panTro1|chr12 (25307187-25307357) | |
| 46-197, gnl|rheMac2|chr13 (24213166-24213333) | |
| 46-197, gnl|rn3|chrUn (42915249-42915419) | |
| 46-197, gnl|tetNig1|chr14 (6081909-6081754) | |
| 46-197, gnl|xenTro1|scaffold_226 (410433-410264) | |
| 426-567, gnl|bosTau2|chr11 (56200230-56200371) | |
| 426-567, gnl|Hg17|chr2 (24420872-24420731) | |
| 426-567, gnl|Mm7|chr12 (4571971-4572112) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cte (0.29274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cut (0.169924) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cut (0.169924) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| spc (0.113366) |