Non-Coding RNA Search

Ss1.1-rhlv21b_b5.5

Sequence:


               
               CCCGGGCGCGACGACGCCGGGAACAGGGGCGCGCGGCGGCCGCGGGAGCCCCAGGAGCAG
GAGCTGCAGCGGCGCCGAGAGCAGAAGCGGCGGCGGCAGGACGCGCAGCAGCTGCAGCAG
CTCAAGCACCTGGAGTCCTTTTATGAAAAACCTCCTCCTGGGCTTATCAAGGAAGATGAG
GCTAAGCCAGAAGACTGTATACCAGATGTCCCAGGCAATGAACATGCCAGGGAATTTCTG
GCCCATGCACCAACCAAAGGACTTTGGATGCCACTGGGGAAAGAAGTCAAAGTCATGCAG
TGTTGGCGCTGTAAACGGTACGGTCACCGAACTGGCGACAAAGAATGCCCTTTTTTTATC
AAAGGCAACCAAAAGTTAGAACAGTTCAGAGTAGCACATGAAGATCCCATGTATGACATC
ATACGAGAGAATAAAAGACATGAAAAAGGATATAAGGATACAACAGTTAAAACAGTTACT
GGAGGATTCAACCTCAGACGAAGATGGGAGCAGCTCCAGTTCCTCAGAATGTAAAGAGAA
ACACAAGAAAAAGAAGAAGAAAGAGAAGCATAAGAAAAAGAAGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGCGCGACGACGCCGGGAACAGGGGCGCGCGGCGGCCGCGGGAGCCCCAGGAGCAG
GAGCTGCAGCGGCGCCGAGAGCAGAAGCGGCGGCGGCAGGACGCGCAGCAGCTGCAGCAG
CTCAAGCACCTGGAGTCCTTTTATGAAAAACCTCCTCCTGGGCTTATCAAGGAAGATGAG
GCTAAGCCAGAAGACTGTATACCAGATGTCCCAGGCAATGAACATGCCAGGGAATTTCTG
GCCCATGCACCAACCAAAGGACTTTGGATGCCACTGGGGAAAGAAGTCAAAGTCATGCAG
TGTTGGCGCTGTAAACGGTACGGTCACCGAACTGGCGACAAAGAATGCCCTTTTTTTATC
AAAGGCAACCAAAAGTTAGAACAGTTCAGAGTAGCACATGAAGATCCCATGTATGACATC
ATACGAGAGAATAAAAGACATGAAAAAGGATATAAGGATACAACAGTTAAAACAGTTACT
GGAGGATTCAACCTCAGACGAAGATGGGAGCAGCTCCAGTTCCTCAGAATGTAAAGAGAA
ACACAAGAAAAAGAAGAAGAAAGAGAAGCATAAGAAAAAGAAGGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RP9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               RP9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               163-303, + strand, RNAz p=0.686081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-303, + strand, RNAz p=0.686081

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               2-140, gnl|bosTau2|chr4 (34609289-34609151)
               

               
               2-140, gnl|canFam2|chr14 (48148473-48148648)
               

               
               2-140, gnl|dasNov1|scaffold_8101 (32126-31935)
               

               
               2-140, gnl|echTel1|scaffold_149162 (727-880)
               

               
               2-140, gnl|hg17|chr7 (32755723-32755904)
               

               
               2-140, gnl|Hg17|chr7 (32922211-32922073)
               

               
               2-140, gnl|loxAfr1|scaffold_1813 (55300-55158)
               

               
               2-140, gnl|mm7|chr9 (22346888-22347042)
               

               
               2-140, gnl|Mm7|chr9 (22347001-22346887)
               

               
               2-140, gnl|oryCun1|scaffold_178475 (123038-122854)
               

               
               2-140, gnl|panTro1|chr6 (33867325-33867506)
               

               
               2-140, gnl|rheMac2|chr3 (93229048-93228867)
               


               
               163-303, gnl|bosTau2|chr4 (34604007-34603867)
               

               
               163-303, gnl|Hg17|chr7 (32912297-32912157)
               

               
               163-303, gnl|Mm7|chr9 (22336324-22336184)
               


               
               455-588, gnl|bosTau2|chr4 (34597687-34597554)
               

               
               455-588, gnl|Hg17|chr7 (32908286-32908153)
               

               
               455-588, gnl|Mm7|chr9 (22327659-22327536)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-140, gnl|bosTau2|chr4 (34609289-34609151)
               

               
               2-140, gnl|canFam2|chr14 (48148473-48148648)
               

               
               2-140, gnl|dasNov1|scaffold_8101 (32126-31935)
               

               
               2-140, gnl|echTel1|scaffold_149162 (727-880)
               

               
               2-140, gnl|hg17|chr7 (32755723-32755904)
               

               
               2-140, gnl|Hg17|chr7 (32922211-32922073)
               

               
               2-140, gnl|loxAfr1|scaffold_1813 (55300-55158)
               

               
               2-140, gnl|mm7|chr9 (22346888-22347042)
               

               
               2-140, gnl|Mm7|chr9 (22347001-22346887)
               

               
               2-140, gnl|oryCun1|scaffold_178475 (123038-122854)
               

               
               2-140, gnl|panTro1|chr6 (33867325-33867506)
               

               
               2-140, gnl|rheMac2|chr3 (93229048-93228867)
               


               
               163-303, gnl|bosTau2|chr4 (34604007-34603867)
               

               
               163-303, gnl|Hg17|chr7 (32912297-32912157)
               

               
               163-303, gnl|Mm7|chr9 (22336324-22336184)
               


               
               455-588, gnl|bosTau2|chr4 (34597687-34597554)
               

               
               455-588, gnl|Hg17|chr7 (32908286-32908153)
               

               
               455-588, gnl|Mm7|chr9 (22327659-22327536)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sme (0.305437)
               

               
               ese (0.253004)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ese (0.253004)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

	2-140, gnl\|bosTau2\|chr4 (34609289-34609151)
	2-140, gnl\|canFam2\|chr14 (48148473-48148648)
	2-140, gnl\|dasNov1\|scaffold_8101 (32126-31935)
	2-140, gnl\|echTel1\|scaffold_149162 (727-880)
	2-140, gnl\|hg17\|chr7 (32755723-32755904)
	2-140, gnl\|Hg17\|chr7 (32922211-32922073)
	2-140, gnl\|loxAfr1\|scaffold_1813 (55300-55158)
	2-140, gnl\|mm7\|chr9 (22346888-22347042)
	2-140, gnl\|Mm7\|chr9 (22347001-22346887)
	2-140, gnl\|oryCun1\|scaffold_178475 (123038-122854)
	2-140, gnl\|panTro1\|chr6 (33867325-33867506)
	2-140, gnl\|rheMac2\|chr3 (93229048-93228867)

	163-303, gnl\|bosTau2\|chr4 (34604007-34603867)
	163-303, gnl\|Hg17\|chr7 (32912297-32912157)
	163-303, gnl\|Mm7\|chr9 (22336324-22336184)

	455-588, gnl\|bosTau2\|chr4 (34597687-34597554)
	455-588, gnl\|Hg17\|chr7 (32908286-32908153)
	455-588, gnl\|Mm7\|chr9 (22327659-22327536)

	sme (0.305437)
	ese (0.253004)
	fbs (0.175346)
	csp (0.161186)
	hyp (0.142837)
	hlv (0.139256)
	ebs (0.118301)