Non-Coding RNA Search

Ss1.1-rhlv21b_g1.5

Sequence:


               
               GTTTTGTTCTCAAATCTGTTGGACCCAGAAGGGGCCTGTTTAGCCCACCCACTCCAGCCA
TTGTCCCAGTTTTCCCCCCAGGGCCCACGCGGCTCCCTCCCACAGCAGCCGTGAATGGCG
ACGACCTTCCCACAGCACAGAAACTGCACCTCCTCACCGCTGGGGGATTTGTCCTTGCTA
TTTATTTTTATATTTATGTCTTATCTCTTCACCTGCCTGTCCCCTCCCCAGGTGGAGAGG
GGACGGTCTGTGGGAAAGGGTGCTTTCCCTTTGCTTCTCAGGGTGGGAAACGGAAGGACG
GCTGCTTTTGCTCCCTCCTTCCTCCTGTGAGGCAACGCCCAAGAGCGAGTGGGGAATTCT
TGAGTCTGAGATGCAGTCCCAGCTCTGCTGTTACTAATCGTGTGATTGGTCAAACTACCT
AACCTTTCTGAGCCTCATGTTCCTCATCTGAGAAAAATGAGGACGATACCTACCTCACAG
GGTTGGTGTGAGGATGAAATGGAGCATTTTCGATGAAAACTCCTTGCACAAGGCCAGATG
TACACAGTAGTCACTCAATAAATGTTAGTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTGTTCTCAAATCTGTTGGACCCAGAAGGGGCCTGTTTAGCCCACCCACTCCAGCCA
TTGTCCCAGTTTTCCCCCCAGGGCCCACGCGGCTCCCTCCCACAGCAGCCGTGAATGGCG
ACGACCTTCCCACAGCACAGAAACTGCACCTCCTCACCGCTGGGGGATTTGTCCTTGCTA
TTTATTTTTATATTTATGTCTTATCTCTTCACCTGCCTGTCCCCTCCCCAGGTGGAGAGG
GGACGGTCTGTGGGAAAGGGTGCTTTCCCTTTGCTTCTCAGGGTGGGAAACGGAAGGACG
GCTGCTTTTGCTCCCTCCTTCCTCCTGTGAGGCAACGCCCAAGAGCGAGTGGGGAATTCT
TGAGTCTGAGATGCAGTCCCAGCTCTGCTGTTACTAATCGTGTGATTGGTCAAACTACCT
AACCTTTCTGAGCCTCATGTTCCTCATCTGAGAAAAATGAGGACGATACCTACCTCACAG
GGTTGGTGTGAGGATGAAATGGAGCATTTTCGATGAAAACTCCTTGCACAAGGCCAGATG
TACACAGTAGTCACTCAATAAATGTTAGTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               270-366, - strand, RNAz p=0.904297

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-366, - strand, RNAz p=0.904297

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-575, gnl|bosTau2|chr8 (31305081-31304504)
               

               
               1-575, gnl|Hg17|chr8 (22164033-22164617)
               

               
               1-575, gnl|Mm7|chr14 (65083895-65083283)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-575, gnl|bosTau2|chr8 (31305081-31304504)
               

               
               1-575, gnl|Hg17|chr8 (22164033-22164617)
               

               
               1-575, gnl|Mm7|chr14 (65083895-65083283)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	1-575, gnl\|bosTau2\|chr8 (31305081-31304504)
	1-575, gnl\|Hg17\|chr8 (22164033-22164617)
	1-575, gnl\|Mm7\|chr14 (65083895-65083283)

	nms (0.213858)
	cag (0.151194)
	hlv (0.139256)
	eep (0.122564)
	eje (0.0988338)