Non-Coding RNA Search

Ss1.1-rhlv21b_i13.5

Sequence:


               
               CCCTCTGCTCAGTGAGTTTTCTATCCTATGGATATCGGCCTTGAGATTTGAGACTGGAGA
GCAGTACCGTCTGCACTGGGTCCCGCAGCCTCCGTCCTTTCAATGCCCAGTTTCCTCTGG
GACTGCTGGCCTTCCCTGGAGATCAGAGCGGTACTGTGTGCCATGGGCTGTATTCAGAGC
ATCGGGGGCAAAGCCAGAGTCTTCCGGGAAGGCATCACGGTGATTGACGTGAAGGCCTCT
ATCGACCCCATCCCCACCAGCATCGATGAGTCCTCCAGCGTGGTGCTCCGCTACCGGACA
CCCCACTTCCGTGCCTCTGCCCAGGTGGTCATGCCACCCATCCCCAAGAAGGAGACCTGG
ATAGTTGGCTGGATTCAGGCGTGCAGCCACATGGAGTTCTACAACCAGTATGGGGAGCAG
GGCATGTCCAGCTGGGAGCTCCCGGACCTCCAGGAAGGCAAGATCGAGGCCATCAGCGAC
TCGGACGGGGTGAACTACCCCTGGTACGGCAACACCACGGAGACCTGCACCATTGTGGGC
CCCACCAAGAGAGACTCCAAGTTCATCATCAGCATGAACGACAACTTCTACCCCAGCGTC
ACGTGGGCCGTGCCCGTCAGCGAGAGCAACGTGGCCAAACTGACCAACATCTACCGGGAC
CAGAGCTTCACCACGTGGCTGGTGGCCACCAGCACCTCCACCAATGACATGATTGTCCTG
CAGACGCTGCACTGGCGCATGCAGCTCAGCATCGAGGTGAACCCCACCCGGCCCCTGGGC
CAGCGCGCCCGGCTGCGGGAGCCCATCGCCCAGGACCAGCCCAAAATCCTGAGCAAGAAC
GAGCCCATCCCGCCCAGCGCCCTGGTCAAGCCCAACGCCAACGACGCTCAGGTCCTCATG
TGGCGGCCCAAGTATGGGCAGCCGCTGGTGGTGATCCCGCCCAAGCACCGGTAACAGCCG
GGGCGCCCTCGAGGTTCCGTCCAAGCCAGAGCACTGCTCAGACCACCCACACGGACTCTG
CGGTCATCCAGCAAAATACAACCTTTCTACCTTCTCCAGCGGGCGGATCTCACTGTGCGA
ACGCCCCGCCCCCCCAGGACCTCCTTCCCTCTCCTTTTCTCATCATTTCAGTCATTCACG
TGCAACAGACTCCCTGAAACAACTGCTTTTTCTCTTCTTTTTTCTTTTTCTTTTTTTTTT
TTTAAACCGCCTTTTTATGAGGTTCAGGGGTGGGACGAGCAGGAGCTGGTGATGAGCCTG
GTTGGCACGGGGGCTGATCCGCAGGCGCGGCAGCCCCTGCCGTGGCAGCTCCCCTCGTCC
TCCGTCACGCGGCCTTACGTAGACTTGCTTTGCCAAACTTTTGCCTTAAGCTGAATTTAA
AGGAAAAAAAAAAACAAAAACCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCTGCTCAGTGAGTTTTCTATCCTATGGATATCGGCCTTGAGATTTGAGACTGGAGA
GCAGTACCGTCTGCACTGGGTCCCGCAGCCTCCGTCCTTTCAATGCCCAGTTTCCTCTGG
GACTGCTGGCCTTCCCTGGAGATCAGAGCGGTACTGTGTGCCATGGGCTGTATTCAGAGC
ATCGGGGGCAAAGCCAGAGTCTTCCGGGAAGGCATCACGGTGATTGACGTGAAGGCCTCT
ATCGACCCCATCCCCACCAGCATCGATGAGTCCTCCAGCGTGGTGCTCCGCTACCGGACA
CCCCACTTCCGTGCCTCTGCCCAGGTGGTCATGCCACCCATCCCCAAGAAGGAGACCTGG
ATAGTTGGCTGGATTCAGGCGTGCAGCCACATGGAGTTCTACAACCAGTATGGGGAGCAG
GGCATGTCCAGCTGGGAGCTCCCGGACCTCCAGGAAGGCAAGATCGAGGCCATCAGCGAC
TCGGACGGGGTGAACTACCCCTGGTACGGCAACACCACGGAGACCTGCACCATTGTGGGC
CCCACCAAGAGAGACTCCAAGTTCATCATCAGCATGAACGACAACTTCTACCCCAGCGTC
ACGTGGGCCGTGCCCGTCAGCGAGAGCAACGTGGCCAAACTGACCAACATCTACCGGGAC
CAGAGCTTCACCACGTGGCTGGTGGCCACCAGCACCTCCACCAATGACATGATTGTCCTG
CAGACGCTGCACTGGCGCATGCAGCTCAGCATCGAGGTGAACCCCACCCGGCCCCTGGGC
CAGCGCGCCCGGCTGCGGGAGCCCATCGCCCAGGACCAGCCCAAAATCCTGAGCAAGAAC
GAGCCCATCCCGCCCAGCGCCCTGGTCAAGCCCAACGCCAACGACGCTCAGGTCCTCATG
TGGCGGCCCAAGTATGGGCAGCCGCTGGTGGTGATCCCGCCCAAGCACCGGTAACAGCCG
GGGCGCCCTCGAGGTTCCGTCCAAGCCAGAGCACTGCTCAGACCACCCACACGGACTCTG
CGGTCATCCAGCAAAATACAACCTTTCTACCTTCTCCAGCGGGCGGATCTCACTGTGCGA
ACGCCCCGCCCCCCCAGGACCTCCTTCCCTCTCCTTTTCTCATCATTTCAGTCATTCACG
TGCAACAGACTCCCTGAAACAACTGCTTTTTCTCTTCTTTTTTCTTTTTCTTTTTTTTTT
TTTAAACCGCCTTTTTATGAGGTTCAGGGGTGGGACGAGCAGGAGCTGGTGATGAGCCTG
GTTGGCACGGGGGCTGATCCGCAGGCGCGGCAGCCCCTGCCGTGGCAGCTCCCCTCGTCC
TCCGTCACGCGGCCTTACGTAGACTTGCTTTGCCAAACTTTTGCCTTAAGCTGAATTTAA
AGGAAAAAAAAAAACAAAAACCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62644932|ref|XP_575110.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62644932|ref|XP_575110.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               663-862, - strand, RNAz p=0.666504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               663-862, - strand, RNAz p=0.666504

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               423-1087, gnl|bosTau2|chr11 (81864630-81863961)
               

               
               423-1087, gnl|Hg17|chr9 (131166294-131165624)
               

               
               423-1087, gnl|Mm7|chr2 (32077087-32076418)
               


               
               1110-1394, gnl|bosTau2|chr11 (81863842-81863580)
               

               
               1110-1394, gnl|Hg17|chr9 (131165521-131165225)
               

               
               1110-1394, gnl|Mm7|chr2 (32076332-32076109)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               423-1087, gnl|bosTau2|chr11 (81864630-81863961)
               

               
               423-1087, gnl|Hg17|chr9 (131166294-131165624)
               

               
               423-1087, gnl|Mm7|chr2 (32077087-32076418)
               


               
               1110-1394, gnl|bosTau2|chr11 (81863842-81863580)
               

               
               1110-1394, gnl|Hg17|chr9 (131165521-131165225)
               

               
               1110-1394, gnl|Mm7|chr2 (32076332-32076109)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               hlv (0.139256)

	423-1087, gnl\|bosTau2\|chr11 (81864630-81863961)
	423-1087, gnl\|Hg17\|chr9 (131166294-131165624)
	423-1087, gnl\|Mm7\|chr2 (32077087-32076418)

	1110-1394, gnl\|bosTau2\|chr11 (81863842-81863580)
	1110-1394, gnl\|Hg17\|chr9 (131165521-131165225)
	1110-1394, gnl\|Mm7\|chr2 (32076332-32076109)