Ss1.1-rhlv23b_f3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGCCAAAACAAAACCGAAGAGGTCTCCAGACTCCAGTCTGAGATTCAGAATACTAAGC AAACATTAAAAAAACTAGAGACTAGGGAGGTGGTTGATCTGTCTAAATATAAAGCAACAA AAAGTGATTTGGAGACACAGATTTCCAACTTAAATGAAAAATTGGCCAATCTGAATAGGA AGTATGAGGAAGTATGTGAGGAGGTTTTGCATGCCAAAAAGAAGGAGCTGTCTGCAAAAG ATGAGAAGGAATTGCTCCATTTCAGCATTGAACAAGAAATCAAGGATCAGCAAGAACGAT GCGATAAGTCCTTAACAACAATCACAGAGTTACAGAGAAGAATACAGGAATCCGCCAAAC AAATTGAAGCGAAAGATAATAAGATAACTGAACTGCTTAACGATGTGGAAAGACTGAAAC AGGCGCTCAATGGCCTTTCCCAGCTCACCTACTCGAGCGGGAGTCCCAGCAAGAGGCAGA GTCAGCTGATTGAGAGTCTGCAGCACCAGGTCAAGTCCCTGCAACAGCAGCTGGCTGATG CTGACAGACAGCACCAAGAAGTAATTGCAATTTATCGGACACACCTTCTTAGTGCTGCAC AGGGTCACATGGATGAAGATGTGCAGGCGGCCTTACTCCAGATCATACAGATGCGGCAGG GGCTTGTGTGCTAGCGTCAGCACCCACCAGCCGACCAGCTCTCCCTGTGGGTGCTGAGCA TTCTGTGTGCAACTCCATGGCCTTTCCAGGCCTCACTGTGCGAGTATAATTAAAATAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGCCAAAACAAAACCGAAGAGGTCTCCAGACTCCAGTCTGAGATTCAGAATACTAAGC AAACATTAAAAAAACTAGAGACTAGGGAGGTGGTTGATCTGTCTAAATATAAAGCAACAA AAAGTGATTTGGAGACACAGATTTCCAACTTAAATGAAAAATTGGCCAATCTGAATAGGA AGTATGAGGAAGTATGTGAGGAGGTTTTGCATGCCAAAAAGAAGGAGCTGTCTGCAAAAG ATGAGAAGGAATTGCTCCATTTCAGCATTGAACAAGAAATCAAGGATCAGCAAGAACGAT GCGATAAGTCCTTAACAACAATCACAGAGTTACAGAGAAGAATACAGGAATCCGCCAAAC AAATTGAAGCGAAAGATAATAAGATAACTGAACTGCTTAACGATGTGGAAAGACTGAAAC AGGCGCTCAATGGCCTTTCCCAGCTCACCTACTCGAGCGGGAGTCCCAGCAAGAGGCAGA GTCAGCTGATTGAGAGTCTGCAGCACCAGGTCAAGTCCCTGCAACAGCAGCTGGCTGATG CTGACAGACAGCACCAAGAAGTAATTGCAATTTATCGGACACACCTTCTTAGTGCTGCAC AGGGTCACATGGATGAAGATGTGCAGGCGGCCTTACTCCAGATCATACAGATGCGGCAGG GGCTTGTGTGCTAGCGTCAGCACCCACCAGCCGACCAGCTCTCCCTGTGGGTGCTGAGCA TTCTGTGTGCAACTCCATGGCCTTTCCAGGCCTCACTGTGCGAGTATAATTAAAATAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 200-319, - strand, RNAz p=0.631783 | |
| 666-780, + strand, RNAz p=0.911037 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-319, - strand, RNAz p=0.631783 | |
| 666-780, + strand, RNAz p=0.911037 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_018003, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-387, gnl|bosTau2|chr10 (12632197-12631811) | |
| 1-387, gnl|canFam2|chr30 (37382274-37382652) | |
| 1-387, gnl|danRer3|chr7 (26258041-26257661) | |
| 1-387, gnl|dasNov1|scaffold_5259 (52465-52114) | |
| 1-387, gnl|echTel1|scaffold_284189 (5791-6169) | |
| 1-387, gnl|fr1|chrUn (228556951-228557334) | |
| 1-387, gnl|galGal2|chr10 (20256524-20256911) | |
| 1-387, gnl|hg17|chr15 (68746108-68746486) | |
| 1-387, gnl|Hg17|chr15 (68746499-68746113) | |
| 1-387, gnl|loxAfr1|scaffold_2422 (70863-70485) | |
| 1-387, gnl|mm7|chr9 (60899221-60898864) | |
| 1-387, gnl|Mm7|chr9 (60898849-60899214) | |
| 1-387, gnl|monDom2|scaffold_12 (40036329-40035942) | |
| 1-387, gnl|oryCun1|scaffold_173391 (14279-13901) | |
| 1-387, gnl|panTro1|chr16 (69378613-69378991) | |
| 1-387, gnl|rheMac2|chr7 (49313475-49313853) | |
| 1-387, gnl|rn3|chr8 (64830700-64830344) | |
| 1-387, gnl|tetNig1|chr5 (10370608-10370230) | |
| 1-387, gnl|xenTro1|scaffold_5 (617701-618043) | |
| 600-780, gnl|bosTau2|chr10 (12625105-12624925) | |
| 600-780, gnl|Hg17|chr15 (68736523-68736340) | |
| 600-780, gnl|Mm7|chr9 (60907099-60907270) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-387, gnl|bosTau2|chr10 (12632197-12631811) | |
| 1-387, gnl|canFam2|chr30 (37382274-37382652) | |
| 1-387, gnl|danRer3|chr7 (26258041-26257661) | |
| 1-387, gnl|dasNov1|scaffold_5259 (52465-52114) | |
| 1-387, gnl|echTel1|scaffold_284189 (5791-6169) | |
| 1-387, gnl|fr1|chrUn (228556951-228557334) | |
| 1-387, gnl|galGal2|chr10 (20256524-20256911) | |
| 1-387, gnl|hg17|chr15 (68746108-68746486) | |
| 1-387, gnl|Hg17|chr15 (68746499-68746113) | |
| 1-387, gnl|loxAfr1|scaffold_2422 (70863-70485) | |
| 1-387, gnl|mm7|chr9 (60899221-60898864) | |
| 1-387, gnl|Mm7|chr9 (60898849-60899214) | |
| 1-387, gnl|monDom2|scaffold_12 (40036329-40035942) | |
| 1-387, gnl|oryCun1|scaffold_173391 (14279-13901) | |
| 1-387, gnl|panTro1|chr16 (69378613-69378991) | |
| 1-387, gnl|rheMac2|chr7 (49313475-49313853) | |
| 1-387, gnl|rn3|chr8 (64830700-64830344) | |
| 1-387, gnl|tetNig1|chr5 (10370608-10370230) | |
| 1-387, gnl|xenTro1|scaffold_5 (617701-618043) | |
| 600-780, gnl|bosTau2|chr10 (12625105-12624925) | |
| 600-780, gnl|Hg17|chr15 (68736523-68736340) | |
| 600-780, gnl|Mm7|chr9 (60907099-60907270) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| gul (0.177588) | |
| ton (0.1755) | |
| duo (0.172801) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| spc (0.113366) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| ton (0.1755) | |
| duo (0.172801) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| spc (0.113366) |