Ss1.1-rhlv23b_h4.5.5
|
GTGTGGTACTTGGCACAGAATAGCCTTGGGCCTGTGTGGCCAGACTTCTGACCCCTTGGG
CAAAAGCCAGATAGAGACTGATTGACGTCGTTCTGAGCGAGGGGACGCAACGGAGGCAGG
CCGGAGCCGCTGCCGTCGCCATGACCCGCGGTAACCAGCGCGAGCTCGCCCGCCAGAAGA
ATATGAAAAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTG
CCGCCCGCAAGCAGAGGGACTCGGAGATCATGCAGCAGAAGCAGAAAAAGGCAAACGAGA
AGAAGGAGGAACCCAAGTAGCTTTGTGGCTTCGTGTCCAACCCTCTTGCCCTTCGCCTGT
GTGCCTGGAGCCAGTCCCACCACGCTCGCGTTTTCTCCTGTAGTGCTCACAGGTCCCAGC
ACCGATGGCATTCCCTTTGCCCTGAGTCTGCAGCGGGTCCCTTTTGTGCTTCCTTCCCCT
CAGGTAGCCTCTCTCCCCCTGGGCCACTCCTGGGGGTGAGGAGGTTACCTCTTCCCAGTG
TTTTTTATTCCTGTGGGGCTCACCCCAAAGTATTAAAAGTAGCTTTGTAATTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGTGGTACTTGGCACAGAATAGCCTTGGGCCTGTGTGGCCAGACTTCTGACCCCTTGGG
CAAAAGCCAGATAGAGACTGATTGACGTCGTTCTGAGCGAGGGGACGCAACGGAGGCAGG
CCGGAGCCGCTGCCGTCGCCATGACCCGCGGTAACCAGCGCGAGCTCGCCCGCCAGAAGA
ATATGAAAAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTG
CCGCCCGCAAGCAGAGGGACTCGGAGATCATGCAGCAGAAGCAGAAAAAGGCAAACGAGA
AGAAGGAGGAACCCAAGTAGCTTTGTGGCTTCGTGTCCAACCCTCTTGCCCTTCGCCTGT
GTGCCTGGAGCCAGTCCCACCACGCTCGCGTTTTCTCCTGTAGTGCTCACAGGTCCCAGC
ACCGATGGCATTCCCTTTGCCCTGAGTCTGCAGCGGGTCCCTTTTGTGCTTCCTTCCCCT
CAGGTAGCCTCTCTCCCCCTGGGCCACTCCTGGGGGTGAGGAGGTTACCTCTTCCCAGTG
TTTTTTATTCCTGTGGGGCTCACCCCAAAGTATTAAAAGTAGCTTTGTAATTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
89-608, gnl|bosTau2|chr8 (18622300-18621781) |
|
89-608, gnl|Hg17|chr15 (41871812-41873536) |
|
89-608, gnl|Mm7|chr4 (43677731-43678242) |
| |
|
255-593, gnl|bosTau2|chr21 (34521356-34521694) |
|
255-593, gnl|canFam2|chr30 (13529309-13529647) |
|
255-593, gnl|dasNov1|scaffold_16689 (3219-3556) |
|
255-593, gnl|echTel1|scaffold_282561 (83957-83620) |
|
255-593, gnl|Hg17|chr15 (41873198-41873536) |
|
255-593, gnl|hg17|chr7 (95580772-95581104) |
|
255-593, gnl|loxAfr1|scaffold_7851 (61712-62041) |
|
255-593, gnl|mm7|chr2 (121191569-121191906) |
|
255-593, gnl|Mm7|chr2 (121191568-121191906) |
|
255-593, gnl|monDom2|scaffold_53 (10282095-10281758) |
|
255-593, gnl|oryCun1|scaffold_175340 (50895-51232) |
|
255-593, gnl|panTro1|chr6 (97191260-97191592) |
|
255-593, gnl|rheMac2|chr3 (120952377-120952044) |
|
255-593, gnl|rn3|chr3 (108157358-108157695) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
89-608, gnl|bosTau2|chr8 (18622300-18621781) |
|
89-608, gnl|Hg17|chr15 (41871812-41873536) |
|
89-608, gnl|Mm7|chr4 (43677731-43678242) |
| |
|
255-593, gnl|bosTau2|chr21 (34521356-34521694) |
|
255-593, gnl|canFam2|chr30 (13529309-13529647) |
|
255-593, gnl|dasNov1|scaffold_16689 (3219-3556) |
|
255-593, gnl|echTel1|scaffold_282561 (83957-83620) |
|
255-593, gnl|Hg17|chr15 (41873198-41873536) |
|
255-593, gnl|hg17|chr7 (95580772-95581104) |
|
255-593, gnl|loxAfr1|scaffold_7851 (61712-62041) |
|
255-593, gnl|mm7|chr2 (121191569-121191906) |
|
255-593, gnl|Mm7|chr2 (121191568-121191906) |
|
255-593, gnl|monDom2|scaffold_53 (10282095-10281758) |
|
255-593, gnl|oryCun1|scaffold_175340 (50895-51232) |
|
255-593, gnl|panTro1|chr6 (97191260-97191592) |
|
255-593, gnl|rheMac2|chr3 (120952377-120952044) |
|
255-593, gnl|rn3|chr3 (108157358-108157695) |
|
cag (5.443) |
|
duo (4.83843) |
|
amn (3.7594) |
|
nca (2.87435) |
|
hlv (2.78513) |
|
jej (2.76981) |
|
cov (2.64306) |
|
elu (2.31214) |
|
nlu (2.30017) |
|
cly (2.29219) |
|
jca (2.16524) |
|
pty (1.998) |
|
cli (1.98655) |
|
eje (1.97668) |
|
nco (1.94081) |
|
med (1.86003) |
|
eep (1.83846) |
|
nje (1.82512) |
|
col (1.75507) |
|
csp (1.61186) |
|
fty (1.58256) |
|
ese (1.51803) |
|
nep (1.4714) |
|
fli (1.42017) |
|
ill (1.40474) |
|
cga (1.39548) |
|
mcp (1.36519) |
|
eru (1.32053) |
|
lnt (1.28077) |
|
eye (1.19352) |
|
hyp (1.14269) |
|
nms (1.06929) |
|
ton (1.053) |
|
ebs (0.94641) |
|
ute (0.929491) |
|
nbm (0.893921) |
|
cki (0.826173) |
|
fce (0.814775) |
|
ecc (0.805246) |
|
nmm (0.796813) |
|
fbs (0.701385) |
|
che (0.68157) |
|
ssp (0.677599) |
|
mas (0.630915) |
|
fcc (0.593354) |
|
eli (0.455443) |
|
cst (0.420109) |
|
cty (0.41632) |
|
fhi (0.339155) |
|
sme (0.305437) |
|
pla (0.267344) |
|
ece (0.229305) |
|
cut (0.169924) |
|
cje (0.165235) |
|
csk (0.140746) |
|
ova (0.129132) |
|
cag (5.443) |
|
duo (4.83843) |
|
amn (3.7594) |
|
nca (2.87435) |
|
hlv (2.78513) |
|
jej (2.76981) |
|
cov (2.64306) |
|
elu (2.31214) |
|
nlu (2.30017) |
|
cly (2.29219) |
|
jca (2.16524) |
|
pty (1.998) |
|
cli (1.98655) |
|
eje (1.97668) |
|
nco (1.94081) |
|
med (1.86003) |
|
eep (1.83846) |
|
nje (1.82512) |
|
col (1.75507) |
|
csp (1.61186) |
|
fty (1.58256) |
|
ese (1.51803) |
|
nep (1.4714) |
|
fli (1.42017) |
|
ill (1.40474) |
|
cga (1.39548) |
|
mcp (1.36519) |
|
eru (1.32053) |
|
lnt (1.28077) |
|
eye (1.19352) |
|
hyp (1.14269) |
|
nms (1.06929) |
|
ton (1.053) |
|
ebs (0.94641) |
|
ute (0.929491) |
|
nbm (0.893921) |
|
cki (0.826173) |
|
fce (0.814775) |
|
ecc (0.805246) |
|
nmm (0.796813) |
|
fbs (0.701385) |
|
che (0.68157) |
|
ssp (0.677599) |
|
mas (0.630915) |
|
fcc (0.593354) |
|
eli (0.455443) |
|
cst (0.420109) |
|
cty (0.41632) |
|
fhi (0.339155) |
|
sme (0.305437) |
|
pla (0.267344) |
|
ece (0.229305) |
|
cut (0.169924) |
|
cje (0.165235) |
|
csk (0.140746) |
|
ova (0.129132) |
