Ss1.1-rhlv23b_i14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGGCGGTGTGCGTGGCTGTGATCGCTAAGGAGAATTACCCTCTCTACATCCGCAGCG TCCCCACGGAGAACGAGCTCCAGTTCCACTACATGCTGCACACGTCCCTGGACGTGGTGG ACGAGAAGATCTCCGCGATGGGGAAGGCGCTGGTGGACCAGAGGGAGCTCTACCTGGGCC TCCTCTACCCCACGGAGGACTACAAGGTCTACGGCTACGTGACCAACTCCAAGGTGAAGT TCGTCATGGTGGTGGATTCTTCCAACACGGCGCTCAGAGACAATGAGATCCGGAGCATGT TCCGGAAGCTGCACAGCTCCTACACCGACGTGATGTGCAACCCCTTCTACACGCCGGGCG ACCGCATTCAGTCCAGGGCCTTCGACAGCATGGTGACAGCCATGATGATCCAGGTCTGCT GAGGGAGAGGAAGCCGCCTTTGGGCAGAGCCGCCTTCGGGCAGAGCCGCCTTCGGACAGA GCGCGGTCTTCGTGGGTGTATTTAGTGCTGTGGGTGCCGGGCCTCCGCTGCGGAGCGCGG CCTCGTGCCCAGGGGGGTGGCGACTAAAGGTCTTGTGAGACCCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGGCGGTGTGCGTGGCTGTGATCGCTAAGGAGAATTACCCTCTCTACATCCGCAGCG TCCCCACGGAGAACGAGCTCCAGTTCCACTACATGCTGCACACGTCCCTGGACGTGGTGG ACGAGAAGATCTCCGCGATGGGGAAGGCGCTGGTGGACCAGAGGGAGCTCTACCTGGGCC TCCTCTACCCCACGGAGGACTACAAGGTCTACGGCTACGTGACCAACTCCAAGGTGAAGT TCGTCATGGTGGTGGATTCTTCCAACACGGCGCTCAGAGACAATGAGATCCGGAGCATGT TCCGGAAGCTGCACAGCTCCTACACCGACGTGATGTGCAACCCCTTCTACACGCCGGGCG ACCGCATTCAGTCCAGGGCCTTCGACAGCATGGTGACAGCCATGATGATCCAGGTCTGCT GAGGGAGAGGAAGCCGCCTTTGGGCAGAGCCGCCTTCGGGCAGAGCCGCCTTCGGACAGA GCGCGGTCTTCGTGGGTGTATTTAGTGCTGTGGGTGCCGGGCCTCCGCTGCGGAGCGCGG CCTCGTGCCCAGGGGGGTGGCGACTAAAGGTCTTGTGAGACCCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 34-211, gnl|bosTau2|chr18 (12549572-12549395) | |
| 34-211, gnl|canFam2|chr5 (67530292-67530074) | |
| 34-211, gnl|canFam2|chr5 (67530080-67530255) | |
| 34-211, gnl|danRer3|chr7 (49405544-49405326) | |
| 34-211, gnl|danRer3|chr7 (49405331-49405508) | |
| 34-211, gnl|dasNov1|scaffold_173772 (621-402) | |
| 34-211, gnl|dasNov1|scaffold_173772 (410-584) | |
| 34-211, gnl|echTel1|scaffold_311874 (44168-44343) | |
| 34-211, gnl|echTel1|scaffold_311874 (44342-44168) | |
| 34-211, gnl|fr1|chrUn (209196368-209196561) | |
| 34-211, gnl|fr1|chrUn (209196556-209196379) | |
| 34-211, gnl|galGal2|chr11 (18947670-18947450) | |
| 34-211, gnl|galGal2|chr11 (18947455-18947631) | |
| 34-211, gnl|hg17|chr16 (87452489-87452709) | |
| 34-211, gnl|Hg17|chr16 (87452526-87452703) | |
| 34-211, gnl|hg17|chrX (69365038-69365215) | |
| 34-211, gnl|loxAfr1|scaffold_17182 (25235-25015) | |
| 34-211, gnl|loxAfr1|scaffold_17182 (25023-25197) | |
| 34-211, gnl|mm7|chr8 (121255050-121255252) | |
| 34-211, gnl|mm7|chr8 (121255243-121255070) | |
| 34-211, gnl|Mm7|chr8 (121255069-121255246) | |
| 34-211, gnl|monDom2|scaffold_23 (8020722-8020526) | |
| 34-211, gnl|monDom2|scaffold_23 (8020534-8020707) | |
| 34-211, gnl|oryCun1|scaffold_81752 (2903-3087) | |
| 34-211, gnl|oryCun1|scaffold_81752 (3084-2912) | |
| 34-211, gnl|panTro1|chr18 (82452612-82452832) | |
| 34-211, gnl|panTro1|chrX (71437006-71437183) | |
| 34-211, gnl|rheMac2|chr20 (87016705-87016925) | |
| 34-211, gnl|rheMac2|chrX (69341687-69341864) | |
| 34-211, gnl|rn3|chr19 (52897156-52897358) | |
| 34-211, gnl|rn3|chrUn (40878888-40879062) | |
| 34-211, gnl|tetNig1|chr5 (7788219-7788032) | |
| 34-211, gnl|tetNig1|chr5 (7788037-7788214) | |
| 34-211, gnl|xenTro1|scaffold_13 (2144205-2144394) | |
| 34-211, gnl|xenTro1|scaffold_13 (2144390-2144213) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-211, gnl|bosTau2|chr18 (12549572-12549395) | |
| 34-211, gnl|canFam2|chr5 (67530292-67530074) | |
| 34-211, gnl|canFam2|chr5 (67530080-67530255) | |
| 34-211, gnl|danRer3|chr7 (49405544-49405326) | |
| 34-211, gnl|danRer3|chr7 (49405331-49405508) | |
| 34-211, gnl|dasNov1|scaffold_173772 (621-402) | |
| 34-211, gnl|dasNov1|scaffold_173772 (410-584) | |
| 34-211, gnl|echTel1|scaffold_311874 (44168-44343) | |
| 34-211, gnl|echTel1|scaffold_311874 (44342-44168) | |
| 34-211, gnl|fr1|chrUn (209196368-209196561) | |
| 34-211, gnl|fr1|chrUn (209196556-209196379) | |
| 34-211, gnl|galGal2|chr11 (18947670-18947450) | |
| 34-211, gnl|galGal2|chr11 (18947455-18947631) | |
| 34-211, gnl|hg17|chr16 (87452489-87452709) | |
| 34-211, gnl|Hg17|chr16 (87452526-87452703) | |
| 34-211, gnl|hg17|chrX (69365038-69365215) | |
| 34-211, gnl|loxAfr1|scaffold_17182 (25235-25015) | |
| 34-211, gnl|loxAfr1|scaffold_17182 (25023-25197) | |
| 34-211, gnl|mm7|chr8 (121255050-121255252) | |
| 34-211, gnl|mm7|chr8 (121255243-121255070) | |
| 34-211, gnl|Mm7|chr8 (121255069-121255246) | |
| 34-211, gnl|monDom2|scaffold_23 (8020722-8020526) | |
| 34-211, gnl|monDom2|scaffold_23 (8020534-8020707) | |
| 34-211, gnl|oryCun1|scaffold_81752 (2903-3087) | |
| 34-211, gnl|oryCun1|scaffold_81752 (3084-2912) | |
| 34-211, gnl|panTro1|chr18 (82452612-82452832) | |
| 34-211, gnl|panTro1|chrX (71437006-71437183) | |
| 34-211, gnl|rheMac2|chr20 (87016705-87016925) | |
| 34-211, gnl|rheMac2|chrX (69341687-69341864) | |
| 34-211, gnl|rn3|chr19 (52897156-52897358) | |
| 34-211, gnl|rn3|chrUn (40878888-40879062) | |
| 34-211, gnl|tetNig1|chr5 (7788219-7788032) | |
| 34-211, gnl|tetNig1|chr5 (7788037-7788214) | |
| 34-211, gnl|xenTro1|scaffold_13 (2144205-2144394) | |
| 34-211, gnl|xenTro1|scaffold_13 (2144390-2144213) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cag (0.604778) | |
| nca (0.547495) | |
| col (0.390016) | |
| nlu (0.383362) | |
| eje (0.296501) | |
| pty (0.285429) | |
| cov (0.264306) | |
| ebs (0.236602) | |
| jej (0.197844) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.604778) | |
| nca (0.547495) | |
| col (0.390016) | |
| nlu (0.383362) | |
| eje (0.296501) | |
| pty (0.285429) | |
| cov (0.264306) | |
| ebs (0.236602) | |
| jej (0.197844) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |