Ss1.1-rhlv23b_o3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCGTCCGGAGCACTGACCCCCAGCGCCTCGGGGGGCTGGACACTCGGCCTCACTATA TCACACGCCGATATGCAGAGTTCTCCTCTGCCCTCGTCAGCATCAATCAGACGATTCCCA ATGAGCGGACGATGCAGCTGCTGGGTCAGCTACAGGTGGAGGTGGAGAATTTTGTCCTCC GAGTAGCAGCCGAGTTCTCCTCAAGGAAGGAGCAGCTTGTGTTTCTGATCAACAACTATG ACATGATGCTGGGCGTGCTGATGGAGAGGGCTGCTGATGACAGCAAAGAGGTTGAAAGTT TCCAGCAGCTGCTCAATGCTCGGACACAGGAATTCATCGAAGAGCTGCTATCTCCCCCTT TTGGGGGTCTGGTGGCATTTGTGAAGGAAGCTGAGGCCCTGATTGAGCGTGGGCAAGCCG AACGACTCCGAGGGGAAGAAGCCCGCGTTACTCAGCTGATCCGGGGCTTTGGCAGTTCCT GGAAGTCGTCTGTGGAGTCCCTGAGCCAGGATGTCATGCGGAGCTTCACCAACTTCAGGA ATGGAACCAGCATCATCCAGGGAGCACTAACCCAGCTGATCCAGCTCTACCACCGCTTCC ACCGTGTGCTGTCCCAGCCCCAGCTCCGAGCCCTCCCAGCCCGTGCTGAGCTTATCAACA TCCACCACCTCATGGTGGAGCTCAAGAAGCACAAGCCCAACTTCTGACACACCAGATGCT GGAGCCACCGGCCCTCCCCATGAACTTCTTCCCTCGGGGTCCCCCTTCCGGTTTGCCCCT GGCCAGAAGAAATTTGAGGATGCAGGCTCTTGACATGCCGCACCCGCCTTCACCCCAGGC ACCTGCCTCCTCAGGATAAGCTGGGTCACCGTGGCTTTCTGAACCTCCTGTCCTCAGGTT TCCAGGACCACTCCCCCCTGGGCTTCCAAAATAACCTTGGTTATTTTTCCAATTTTCTCA TTCCTCTTCCCCCTACACCGCCCTGCCCTTTTCTTCTGCTGGTGAAACCCTCGCTGCCAC ATCTTTGGTTCACTCAGCTCTTACCCCCTGGTGTCAGGTGTGAAGCCTCAGCTCTTGGAG TTGGTGTAGCAGGGGAGACTGCCTCATAACAGTTGATTTTTTTTTTCCTACTCAAAGTGA TCCTTTTCTGTAGCTTTTTGACCTAAGATCTCAGCAACTTGAACACTAACCAGTCCCCTC CTGGCTTGAGAGTTACTCCATCCAAGGTCAGTCTGCAGAAAACAATAAATGTTTAATATG ACATAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCGTCCGGAGCACTGACCCCCAGCGCCTCGGGGGGCTGGACACTCGGCCTCACTATA TCACACGCCGATATGCAGAGTTCTCCTCTGCCCTCGTCAGCATCAATCAGACGATTCCCA ATGAGCGGACGATGCAGCTGCTGGGTCAGCTACAGGTGGAGGTGGAGAATTTTGTCCTCC GAGTAGCAGCCGAGTTCTCCTCAAGGAAGGAGCAGCTTGTGTTTCTGATCAACAACTATG ACATGATGCTGGGCGTGCTGATGGAGAGGGCTGCTGATGACAGCAAAGAGGTTGAAAGTT TCCAGCAGCTGCTCAATGCTCGGACACAGGAATTCATCGAAGAGCTGCTATCTCCCCCTT TTGGGGGTCTGGTGGCATTTGTGAAGGAAGCTGAGGCCCTGATTGAGCGTGGGCAAGCCG AACGACTCCGAGGGGAAGAAGCCCGCGTTACTCAGCTGATCCGGGGCTTTGGCAGTTCCT GGAAGTCGTCTGTGGAGTCCCTGAGCCAGGATGTCATGCGGAGCTTCACCAACTTCAGGA ATGGAACCAGCATCATCCAGGGAGCACTAACCCAGCTGATCCAGCTCTACCACCGCTTCC ACCGTGTGCTGTCCCAGCCCCAGCTCCGAGCCCTCCCAGCCCGTGCTGAGCTTATCAACA TCCACCACCTCATGGTGGAGCTCAAGAAGCACAAGCCCAACTTCTGACACACCAGATGCT GGAGCCACCGGCCCTCCCCATGAACTTCTTCCCTCGGGGTCCCCCTTCCGGTTTGCCCCT GGCCAGAAGAAATTTGAGGATGCAGGCTCTTGACATGCCGCACCCGCCTTCACCCCAGGC ACCTGCCTCCTCAGGATAAGCTGGGTCACCGTGGCTTTCTGAACCTCCTGTCCTCAGGTT TCCAGGACCACTCCCCCCTGGGCTTCCAAAATAACCTTGGTTATTTTTCCAATTTTCTCA TTCCTCTTCCCCCTACACCGCCCTGCCCTTTTCTTCTGCTGGTGAAACCCTCGCTGCCAC ATCTTTGGTTCACTCAGCTCTTACCCCCTGGTGTCAGGTGTGAAGCCTCAGCTCTTGGAG TTGGTGTAGCAGGGGAGACTGCCTCATAACAGTTGATTTTTTTTTTCCTACTCAAAGTGA TCCTTTTCTGTAGCTTTTTGACCTAAGATCTCAGCAACTTGAACACTAACCAGTCCCCTC CTGGCTTGAGAGTTACTCCATCCAAGGTCAGTCTGCAGAAAACAATAAATGTTTAATATG ACATAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 558-726, - strand, RNAz p=0.927803 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 558-726, - strand, RNAz p=0.927803 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 153-264, gnl|bosTau2|chr23 (5803350-5803239) | |
| 153-264, gnl|canFam2|chr12 (5709559-5709682) | |
| 153-264, gnl|danRer3|chrUn (82667883-82667988) | |
| 153-264, gnl|dasNov1|scaffold_30296 (7265-7158) | |
| 153-264, gnl|echTel1|scaffold_163300 (6880-7004) | |
| 153-264, gnl|fr1|chrUn (71211984-71212088) | |
| 153-264, gnl|hg17|chr6 (33339538-33339661) | |
| 153-264, gnl|Hg17|chr6 (33339637-33339537) | |
| 153-264, gnl|loxAfr1|scaffold_39118 (9132-9010) | |
| 153-264, gnl|mm7|chr17 (32041082-32040960) | |
| 153-264, gnl|Mm7|chr17 (32040981-32041092) | |
| 153-264, gnl|monDom2|scaffold_2029 (6353-6230) | |
| 153-264, gnl|oryCun1|scaffold_197614 (24585-24711) | |
| 153-264, gnl|panTro1|chr5 (33784427-33784550) | |
| 153-264, gnl|rheMac2|chr4 (32978138-32978261) | |
| 153-264, gnl|rn3|chr20 (5076726-5076848) | |
| 153-264, gnl|tetNig1|chrUn_random (85979544-85979441) | |
| 153-264, gnl|xenTro1|scaffold_726 (410840-410962) | |
| 326-441, gnl|bosTau2|chr23 (5793151-5793036) | |
| 326-441, gnl|canFam2|chr12 (5702064-5702201) | |
| 326-441, gnl|danRer3|chrUn (82667499-82667625) | |
| 326-441, gnl|dasNov1|scaffold_51572 (5203-5072) | |
| 326-441, gnl|echTel1|scaffold_163300 (818-951) | |
| 326-441, gnl|fr1|chrUn (71211600-71211727) | |
| 326-441, gnl|hg17|chr6 (33327609-33327742) | |
| 326-441, gnl|Hg17|chr6 (33327730-33327615) | |
| 326-441, gnl|mm7|chr17 (32043656-32043523) | |
| 326-441, gnl|Mm7|chr17 (32043531-32043648) | |
| 326-441, gnl|monDom2|scaffold_2029 (7062-6934) | |
| 326-441, gnl|oryCun1|scaffold_197614 (20196-20327) | |
| 326-441, gnl|panTro1|chr5 (33772344-33772477) | |
| 326-441, gnl|rheMac2|chr4 (32965644-32965775) | |
| 326-441, gnl|rn3|chr20 (5075687-5075820) | |
| 326-441, gnl|tetNig1|chrUn_random (85980052-85979928) | |
| 326-441, gnl|xenTro1|scaffold_726 (410302-410426) | |
| 558-1266, gnl|bosTau2|chr23 (5792478-5791765) | |
| 558-1266, gnl|Hg17|chr6 (33326850-33326033) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-264, gnl|bosTau2|chr23 (5803350-5803239) | |
| 153-264, gnl|canFam2|chr12 (5709559-5709682) | |
| 153-264, gnl|danRer3|chrUn (82667883-82667988) | |
| 153-264, gnl|dasNov1|scaffold_30296 (7265-7158) | |
| 153-264, gnl|echTel1|scaffold_163300 (6880-7004) | |
| 153-264, gnl|fr1|chrUn (71211984-71212088) | |
| 153-264, gnl|hg17|chr6 (33339538-33339661) | |
| 153-264, gnl|Hg17|chr6 (33339637-33339537) | |
| 153-264, gnl|loxAfr1|scaffold_39118 (9132-9010) | |
| 153-264, gnl|mm7|chr17 (32041082-32040960) | |
| 153-264, gnl|Mm7|chr17 (32040981-32041092) | |
| 153-264, gnl|monDom2|scaffold_2029 (6353-6230) | |
| 153-264, gnl|oryCun1|scaffold_197614 (24585-24711) | |
| 153-264, gnl|panTro1|chr5 (33784427-33784550) | |
| 153-264, gnl|rheMac2|chr4 (32978138-32978261) | |
| 153-264, gnl|rn3|chr20 (5076726-5076848) | |
| 153-264, gnl|tetNig1|chrUn_random (85979544-85979441) | |
| 153-264, gnl|xenTro1|scaffold_726 (410840-410962) | |
| 326-441, gnl|bosTau2|chr23 (5793151-5793036) | |
| 326-441, gnl|canFam2|chr12 (5702064-5702201) | |
| 326-441, gnl|danRer3|chrUn (82667499-82667625) | |
| 326-441, gnl|dasNov1|scaffold_51572 (5203-5072) | |
| 326-441, gnl|echTel1|scaffold_163300 (818-951) | |
| 326-441, gnl|fr1|chrUn (71211600-71211727) | |
| 326-441, gnl|hg17|chr6 (33327609-33327742) | |
| 326-441, gnl|Hg17|chr6 (33327730-33327615) | |
| 326-441, gnl|mm7|chr17 (32043656-32043523) | |
| 326-441, gnl|Mm7|chr17 (32043531-32043648) | |
| 326-441, gnl|monDom2|scaffold_2029 (7062-6934) | |
| 326-441, gnl|oryCun1|scaffold_197614 (20196-20327) | |
| 326-441, gnl|panTro1|chr5 (33772344-33772477) | |
| 326-441, gnl|rheMac2|chr4 (32965644-32965775) | |
| 326-441, gnl|rn3|chr20 (5075687-5075820) | |
| 326-441, gnl|tetNig1|chrUn_random (85980052-85979928) | |
| 326-441, gnl|xenTro1|scaffold_726 (410302-410426) | |
| 558-1266, gnl|bosTau2|chr23 (5792478-5791765) | |
| 558-1266, gnl|Hg17|chr6 (33326850-33326033) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fhi (0.339155) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fhi (0.339155) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |