Ss1.1-rhlv24b_a21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAGTATGGATGACATCTACAAGGCTGCGGTAGAGCAGCTGACAGAAGAGCAGAAAAAT GAGTTCAAGGCAGCCTTTGACATCTTCGTGCTGGGCGCCGAGGATGGCTGCATTAGCACC AAGGAGCTGGGCAAAGTGATGAGGATGCTGGGCCAGAACCCCACACCTGAGGAACTGCAG GAGATGATTGACGAGGTGGATGAAGACGGGAGTGGCACAGTGGACTTCGATGAGTTCTTG GTCATGATGGTTCGGTGCATGAAGGATGACAGCAAAGGAAAGTCTGAGGAGGAGCTTTCT GACCTCTTCCGCATGTTTGACAAAAACGCTGATGGCTATATCGACCTGGAGGAGCTGAAG ATAATGCTTCAGGCGACAGGCGAGACCATCACAGAGGATGACATCGAGGAGCTCATGAAA GATGGTGACAAGAACAATGATGGCCGCATTGACTATGACGAATTCCTGGAGTTCATGAAG GGGGTGGAGTAAACACCGACCTTCGTTCAGAGCTGCCTGTACCACCTTCCAACTCCAGCC CAGCCCCGGGGTTGGGGGCAGGGAGCCAGAGTCCCCAGGATATGAATTTGGGTATGTGCT TGACCACAGGCCCTCCCTGACTACCTTACCCAGCCCTGTCCTAGAGAATGCAAATAAAGC CCTGCTCCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAGTATGGATGACATCTACAAGGCTGCGGTAGAGCAGCTGACAGAAGAGCAGAAAAAT GAGTTCAAGGCAGCCTTTGACATCTTCGTGCTGGGCGCCGAGGATGGCTGCATTAGCACC AAGGAGCTGGGCAAAGTGATGAGGATGCTGGGCCAGAACCCCACACCTGAGGAACTGCAG GAGATGATTGACGAGGTGGATGAAGACGGGAGTGGCACAGTGGACTTCGATGAGTTCTTG GTCATGATGGTTCGGTGCATGAAGGATGACAGCAAAGGAAAGTCTGAGGAGGAGCTTTCT GACCTCTTCCGCATGTTTGACAAAAACGCTGATGGCTATATCGACCTGGAGGAGCTGAAG ATAATGCTTCAGGCGACAGGCGAGACCATCACAGAGGATGACATCGAGGAGCTCATGAAA GATGGTGACAAGAACAATGATGGCCGCATTGACTATGACGAATTCCTGGAGTTCATGAAG GGGGTGGAGTAAACACCGACCTTCGTTCAGAGCTGCCTGTACCACCTTCCAACTCCAGCC CAGCCCCGGGGTTGGGGGCAGGGAGCCAGAGTCCCCAGGATATGAATTTGGGTATGTGCT TGACCACAGGCCCTCCCTGACTACCTTACCCAGCCCTGTCCTAGAGAATGCAAATAAAGC CCTGCTCCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 34-266, gnl|bosTau2|chr29 (31193105-31192876) | |
| 34-266, gnl|Hg17|chr14 (89936165-89940016) | |
| 34-266, gnl|Mm7|chr12 (97697748-97701022) | |
| 61-209, gnl|bosTau2|chr13 (54437973-54437828) | |
| 61-209, gnl|canFam2|chr24 (36113826-36113966) | |
| 61-209, gnl|danRer3|chr23 (22120149-22120287) | |
| 61-209, gnl|dasNov1|scaffold_82 (46126-46266) | |
| 61-209, gnl|echTel1|scaffold_234310 (2833-2691) | |
| 61-209, gnl|fr1|chrUn (299235403-299235263) | |
| 61-209, gnl|galGal2|chr20 (10026456-10026595) | |
| 61-209, gnl|hg17|chr20 (43886535-43886675) | |
| 61-209, gnl|Hg17|chr20 (43886685-43886540) | |
| 61-209, gnl|loxAfr1|scaffold_60897 (5806-5948) | |
| 61-209, gnl|mm7|chr2 (164518592-164518732) | |
| 61-209, gnl|Mm7|chr2 (164518742-164518597) | |
| 61-209, gnl|monDom2|scaffold_35 (25148435-25148574) | |
| 61-209, gnl|oryCun1|scaffold_198307 (38218-38075) | |
| 61-209, gnl|rheMac2|chr10 (18675069-18674929) | |
| 61-209, gnl|rn3|chr3 (155713959-155714099) | |
| 61-209, gnl|tetNig1|chrUn_random (51610135-51610274) | |
| 61-209, gnl|xenTro1|scaffold_131 (1697319-1697181) | |
| 318-458, gnl|bosTau2|chr22 (37035829-37035689) | |
| 318-458, gnl|Hg17|chr3 (52460586-52460449) | |
| 318-458, gnl|Mm7|chr14 (28640909-28641061) | |
| 460-669, gnl|bosTau2|chr22 (37035606-37035397) | |
| 460-669, gnl|Hg17|chr3 (52460363-52460159) | |
| 460-669, gnl|Mm7|chr14 (28641152-28641358) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-266, gnl|bosTau2|chr29 (31193105-31192876) | |
| 34-266, gnl|Hg17|chr14 (89936165-89940016) | |
| 34-266, gnl|Mm7|chr12 (97697748-97701022) | |
| 61-209, gnl|bosTau2|chr13 (54437973-54437828) | |
| 61-209, gnl|canFam2|chr24 (36113826-36113966) | |
| 61-209, gnl|danRer3|chr23 (22120149-22120287) | |
| 61-209, gnl|dasNov1|scaffold_82 (46126-46266) | |
| 61-209, gnl|echTel1|scaffold_234310 (2833-2691) | |
| 61-209, gnl|fr1|chrUn (299235403-299235263) | |
| 61-209, gnl|galGal2|chr20 (10026456-10026595) | |
| 61-209, gnl|hg17|chr20 (43886535-43886675) | |
| 61-209, gnl|Hg17|chr20 (43886685-43886540) | |
| 61-209, gnl|loxAfr1|scaffold_60897 (5806-5948) | |
| 61-209, gnl|mm7|chr2 (164518592-164518732) | |
| 61-209, gnl|Mm7|chr2 (164518742-164518597) | |
| 61-209, gnl|monDom2|scaffold_35 (25148435-25148574) | |
| 61-209, gnl|oryCun1|scaffold_198307 (38218-38075) | |
| 61-209, gnl|rheMac2|chr10 (18675069-18674929) | |
| 61-209, gnl|rn3|chr3 (155713959-155714099) | |
| 61-209, gnl|tetNig1|chrUn_random (51610135-51610274) | |
| 61-209, gnl|xenTro1|scaffold_131 (1697319-1697181) | |
| 318-458, gnl|bosTau2|chr22 (37035829-37035689) | |
| 318-458, gnl|Hg17|chr3 (52460586-52460449) | |
| 318-458, gnl|Mm7|chr14 (28640909-28641061) | |
| 460-669, gnl|bosTau2|chr22 (37035606-37035397) | |
| 460-669, gnl|Hg17|chr3 (52460363-52460159) | |
| 460-669, gnl|Mm7|chr14 (28641152-28641358) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| hlv (17.9641) | |
| mas (6.09884) | |
| ssp (2.84591) | |
| hea (2.24949) | |
| ese (1.77103) | |
| nep (1.65532) | |
| nms (1.49701) | |
| ldo (0.873024) | |
| ctl (0.765345) | |
| vin (0.665115) | |
| isp (0.451128) | |
| sme (0.305437) | |
| eru (0.240096) | |
| col (0.195008) | |
| ton (0.1755) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| jca (0.11396) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (17.9641) | |
| mas (6.09884) | |
| ssp (2.84591) | |
| hea (2.24949) | |
| ese (1.77103) | |
| nep (1.65532) | |
| nms (1.49701) | |
| ldo (0.873024) | |
| ctl (0.765345) | |
| vin (0.665115) | |
| isp (0.451128) | |
| sme (0.305437) | |
| eru (0.240096) | |
| col (0.195008) | |
| ton (0.1755) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| jca (0.11396) |