Ss1.1-rhlv24b_m19.5
|
CCGTAGCGGAGCCCTCTGGCTGTGTGTGTCTGAGGATCCGCCGCCAGAGCTGCGGACGGT
TTGCTGAGCCCGTTAGTGTCCGTGCTGAGACTTACGCCGCAGTCATGTCTCGGTATCTGC
GTCCCCCCAATACGTCTCTGTTCGTGAGGAACGTGGCCGACGATACCAGGTCTGAAGATT
TGCGACGTGAATTTGGTCGTTATGGTCCTATAGTTGATGTGTATGTTCCACTTGATTTCT
ACACTCGTCGTCCAAGAGGATTTGCATATGTTCAATTTGAGGATGTTCGTGATGCTGAAG
ATGCTTTGCATAATTTGGACAGAAAATGGATTTGTGGACGCCAAATTGAAATACAGTTCG
CACAGGGGGATCGGAAGACTCCAAATCAGATGAAAGCAAAGGAAGGGAGAAATGTGTACA
GTTCTTCACGCTATGATGATTATGACAGATATAGGCGTTCTAGAAGCCGAAGTTACGAAA
GAAGGAGATCAAGAAGTCGGTCCTTTGATTACAACTATAGAAGATCTTATAGCCCTAGAA
ACAGTAGACCGACTGGAAGACCACGGCGTAGCAGAAGCCATTCCGACAATGATAGACCAA
ACTGCAGCTGGAATACCCAGTACAGTTCTGCTTACTACACTTCAAGAAAGATCTGAGAAA
GCGGAAAAAGAACCAAAGAAGGGCAGTTCAAGCGACCAAAGGGTGGGTGGAAGGTGCTGC
AGTATGAATACTGTACGAATATTTTGACTCTGGTCTGAAAAGATAAAAGAATGTTATCGA
AACTACATGGAATAATTGAAGTCCCTTCAAGTTTGAAAGTAAGCATTTTAGGACAAATAA
AAGGAAATTCAACTTTGTACTTGTGGAAACTCATCCCTAAATCTGAATAGGTTTATACTG
ATTCATGGGTAACAGGTCCATGTTAAATTATTGGAAACTAGGATGTCTGAATGTCAAGGA
AGACAGCCATAGTCTCTTACAGTGCCTCTATTGGTCTGTCTCAAACTGAATTGGGTGAGA
AAAGGTATGGTCCAGTATAAACTTTCTTGGTTATCTTTTAAAGTCAGTTCTATTTTTGCT
GTTGGCAAATCTTGCCTTTGTTTATTCCAGTGCCAGTGTTTTCCGCTTAATGGTTTGCTT
TGTTGGCATCTGAGTTTACTTACCTGTATGCCACATGCGGTTTACATCTTCCCTAAACAC
TCTCCCAAGTAAATTCCAATTATAATACTTGACATCCAGCTAAAAGGGTCCATCTCTTCT
CACCTCTTTCCTAGTCAGTATATTGAGCAAACATTTGCTGAGCCCTGATGTGGGCAAAAA
TTGTACTGGGTAATTGGGGAGAAAAATAGGTAAAATACACTTATTCGATAAATGTCTACT
GAGCACAATCTAGTGAATCATTACAGTATGGCCTCATTGTTTTGTTTGAGGTGTATTATT
CATAATATTTTACACCGTTTATATCCTATGTAATTATAAAACCCAACATACTATCAAAGA
TAAGTAATTTTGTGGTTATTTGCCATTAAAAGTATACAGTATTTGTTTGCATCCCATTAG
TACAAATAATGAAAAAATGATTTGTTTTCATCTGTAATAAACTGATTTATTGTGCAGTGA
CTGTAATATACTAGTTATATTAAGTTGTTAACTCTGCCTCCTCAAACACATATTAGGAAA
TAGTCCCCCAAATAAGTATTTAACTTTGCATCAGATATAAAGGAGACTCTGGGTGCTATA
ATTTAGACTTATTTTGAGGCAGACAGAGAGCTGTTATCCCACTGATTTAGTATGTTCTGT
AATTGAGAAAATGTTCACCAAATTATACTTTTTAGTGATTTACATGTACATTTTATAGGG
GACATGTTCTGTGTATAGTTAATAAATAACTTTTATAGCATCACAAAATGTTTTGGATTC
CTTAGTTCCTTATTAGGACATGAAGTTTACCTATACATCGATTTCATCACTTGCATATTT
GATTTGTCTTATTTCTGCCACTTTTAAAATTTTCCATGTAAAGTTATTCATCTAAATATA
TGGAAGTGTTTTAAGCTTGTAATTTATAAAGATTTTGAAAATATAGCAGGATACACCGAA
AGATACGAAATGGAGGTCTTTTTAACTCCTATTTAATTTTTTAGTTTTTTGAACTTACCC
AAGATCACACAGCAAGTAAGTGGGAGATACTAGATTAGTGTTCATGGTTTTTCACTTGGT
TCCTGTTTGTTTCTGTTATTTTTTAAAATAAATTTTTAATAACTTAATGTGATTAATATA
ATGGAAACGAGTTCAATTAGAGGGAAGATTTAATAATTTATAAAAATAATTTAATTACAA
AAAGTATTTTGTTTGTAGCTTTCCTGAATGAGAGGCTAAATGTAATCCACGATCTCATAG
CTGTTATGACTCACTCTCCGGCCTGGCTTTTTAAATTTTAGTCTCACTGTATTGCATTTT
GACCATATTCTTGTTTGTAAAATTCTGAGATATCTTGAAGTGGGGAGGCTGTGACTTGAA
CAGCACAGTGGTCGCTCAGGAGTTAATTTTAACAGTGTTCCATAGGAGGTCTTTCTCGCT
TTTAGGACTTCCATGCATAAACTGTCCTGATTGATAAATGAAGTAAGCAACCTGTTTGTC
TTCAACTACTGACATCTGTGCATAGCTAGCTGCTATAGAAAAGGTTCCTTCCCGGGTTTT
TTTCATTTGCCCCCTCCAACAGATTTGGTTATGTTCATTGCATTATTTCTATGTATTCCT
AACAGTTGTTTCACCCCTATGTTAAAGATGGGATTCTTTAATAAGCAAGGCATGTGAATT
CATTTTATTGATAATTGACAGAGTAGTTTGTAAAGAAGTAGAAAAGGCGTTTGTGTCCAG
TTTTTTGTAGATCTCTCTGAATGCTAGATAATGAAATAAACTGGTCTAGGATCCAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGTAGCGGAGCCCTCTGGCTGTGTGTGTCTGAGGATCCGCCGCCAGAGCTGCGGACGGT
TTGCTGAGCCCGTTAGTGTCCGTGCTGAGACTTACGCCGCAGTCATGTCTCGGTATCTGC
GTCCCCCCAATACGTCTCTGTTCGTGAGGAACGTGGCCGACGATACCAGGTCTGAAGATT
TGCGACGTGAATTTGGTCGTTATGGTCCTATAGTTGATGTGTATGTTCCACTTGATTTCT
ACACTCGTCGTCCAAGAGGATTTGCATATGTTCAATTTGAGGATGTTCGTGATGCTGAAG
ATGCTTTGCATAATTTGGACAGAAAATGGATTTGTGGACGCCAAATTGAAATACAGTTCG
CACAGGGGGATCGGAAGACTCCAAATCAGATGAAAGCAAAGGAAGGGAGAAATGTGTACA
GTTCTTCACGCTATGATGATTATGACAGATATAGGCGTTCTAGAAGCCGAAGTTACGAAA
GAAGGAGATCAAGAAGTCGGTCCTTTGATTACAACTATAGAAGATCTTATAGCCCTAGAA
ACAGTAGACCGACTGGAAGACCACGGCGTAGCAGAAGCCATTCCGACAATGATAGACCAA
ACTGCAGCTGGAATACCCAGTACAGTTCTGCTTACTACACTTCAAGAAAGATCTGAGAAA
GCGGAAAAAGAACCAAAGAAGGGCAGTTCAAGCGACCAAAGGGTGGGTGGAAGGTGCTGC
AGTATGAATACTGTACGAATATTTTGACTCTGGTCTGAAAAGATAAAAGAATGTTATCGA
AACTACATGGAATAATTGAAGTCCCTTCAAGTTTGAAAGTAAGCATTTTAGGACAAATAA
AAGGAAATTCAACTTTGTACTTGTGGAAACTCATCCCTAAATCTGAATAGGTTTATACTG
ATTCATGGGTAACAGGTCCATGTTAAATTATTGGAAACTAGGATGTCTGAATGTCAAGGA
AGACAGCCATAGTCTCTTACAGTGCCTCTATTGGTCTGTCTCAAACTGAATTGGGTGAGA
AAAGGTATGGTCCAGTATAAACTTTCTTGGTTATCTTTTAAAGTCAGTTCTATTTTTGCT
GTTGGCAAATCTTGCCTTTGTTTATTCCAGTGCCAGTGTTTTCCGCTTAATGGTTTGCTT
TGTTGGCATCTGAGTTTACTTACCTGTATGCCACATGCGGTTTACATCTTCCCTAAACAC
TCTCCCAAGTAAATTCCAATTATAATACTTGACATCCAGCTAAAAGGGTCCATCTCTTCT
CACCTCTTTCCTAGTCAGTATATTGAGCAAACATTTGCTGAGCCCTGATGTGGGCAAAAA
TTGTACTGGGTAATTGGGGAGAAAAATAGGTAAAATACACTTATTCGATAAATGTCTACT
GAGCACAATCTAGTGAATCATTACAGTATGGCCTCATTGTTTTGTTTGAGGTGTATTATT
CATAATATTTTACACCGTTTATATCCTATGTAATTATAAAACCCAACATACTATCAAAGA
TAAGTAATTTTGTGGTTATTTGCCATTAAAAGTATACAGTATTTGTTTGCATCCCATTAG
TACAAATAATGAAAAAATGATTTGTTTTCATCTGTAATAAACTGATTTATTGTGCAGTGA
CTGTAATATACTAGTTATATTAAGTTGTTAACTCTGCCTCCTCAAACACATATTAGGAAA
TAGTCCCCCAAATAAGTATTTAACTTTGCATCAGATATAAAGGAGACTCTGGGTGCTATA
ATTTAGACTTATTTTGAGGCAGACAGAGAGCTGTTATCCCACTGATTTAGTATGTTCTGT
AATTGAGAAAATGTTCACCAAATTATACTTTTTAGTGATTTACATGTACATTTTATAGGG
GACATGTTCTGTGTATAGTTAATAAATAACTTTTATAGCATCACAAAATGTTTTGGATTC
CTTAGTTCCTTATTAGGACATGAAGTTTACCTATACATCGATTTCATCACTTGCATATTT
GATTTGTCTTATTTCTGCCACTTTTAAAATTTTCCATGTAAAGTTATTCATCTAAATATA
TGGAAGTGTTTTAAGCTTGTAATTTATAAAGATTTTGAAAATATAGCAGGATACACCGAA
AGATACGAAATGGAGGTCTTTTTAACTCCTATTTAATTTTTTAGTTTTTTGAACTTACCC
AAGATCACACAGCAAGTAAGTGGGAGATACTAGATTAGTGTTCATGGTTTTTCACTTGGT
TCCTGTTTGTTTCTGTTATTTTTTAAAATAAATTTTTAATAACTTAATGTGATTAATATA
ATGGAAACGAGTTCAATTAGAGGGAAGATTTAATAATTTATAAAAATAATTTAATTACAA
AAAGTATTTTGTTTGTAGCTTTCCTGAATGAGAGGCTAAATGTAATCCACGATCTCATAG
CTGTTATGACTCACTCTCCGGCCTGGCTTTTTAAATTTTAGTCTCACTGTATTGCATTTT
GACCATATTCTTGTTTGTAAAATTCTGAGATATCTTGAAGTGGGGAGGCTGTGACTTGAA
CAGCACAGTGGTCGCTCAGGAGTTAATTTTAACAGTGTTCCATAGGAGGTCTTTCTCGCT
TTTAGGACTTCCATGCATAAACTGTCCTGATTGATAAATGAAGTAAGCAACCTGTTTGTC
TTCAACTACTGACATCTGTGCATAGCTAGCTGCTATAGAAAAGGTTCCTTCCCGGGTTTT
TTTCATTTGCCCCCTCCAACAGATTTGGTTATGTTCATTGCATTATTTCTATGTATTCCT
AACAGTTGTTTCACCCCTATGTTAAAGATGGGATTCTTTAATAAGCAAGGCATGTGAATT
CATTTTATTGATAATTGACAGAGTAGTTTGTAAAGAAGTAGAAAAGGCGTTTGTGTCCAG
TTTTTTGTAGATCTCTCTGAATGCTAGATAATGAAATAAACTGGTCTAGGATCCAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-602, gnl|bosTau2|chr19 (28639972-28639366) |
|
3-602, gnl|Hg17|chr14 (57166297-57166869) |
|
3-602, gnl|Mm7|chr13 (19363298-19362690) |
| |
|
275-404, gnl|bosTau2|chr11 (30863394-30863265) |
|
275-404, gnl|Hg17|chr6 (89871968-89871673) |
|
275-404, gnl|Mm7|chr4 (33504170-33504458) |
| |
|
1379-1654, gnl|bosTau2|chr8 (20166586-20166296) |
|
1379-1654, gnl|Hg17|chr9 (105551362-105551109) |
|
1379-1654, gnl|Mm7|chr4 (135246332-135246569) |
| |
|
1702-1876, gnl|bosTau2|chr8 (20165843-20165671) |
|
1702-1876, gnl|Hg17|chr9 (105551032-105550866) |
|
1702-1876, gnl|Mm7|chr4 (135246626-135246789) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-602, gnl|bosTau2|chr19 (28639972-28639366) |
|
3-602, gnl|Hg17|chr14 (57166297-57166869) |
|
3-602, gnl|Mm7|chr13 (19363298-19362690) |
| |
|
275-404, gnl|bosTau2|chr11 (30863394-30863265) |
|
275-404, gnl|Hg17|chr6 (89871968-89871673) |
|
275-404, gnl|Mm7|chr4 (33504170-33504458) |
| |
|
1379-1654, gnl|bosTau2|chr8 (20166586-20166296) |
|
1379-1654, gnl|Hg17|chr9 (105551362-105551109) |
|
1379-1654, gnl|Mm7|chr4 (135246332-135246569) |
| |
|
1702-1876, gnl|bosTau2|chr8 (20165843-20165671) |
|
1702-1876, gnl|Hg17|chr9 (105551032-105550866) |
|
1702-1876, gnl|Mm7|chr4 (135246626-135246789) |
|
liv (1.02399) |
|
thg (0.887536) |
|
cte (0.58548) |
|
gul (0.532765) |
|
pro (0.512033) |
|
aor (0.390549) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
cmu (0.372787) |
|
tra (0.369276) |
|
ton (0.351) |
|
rec (0.346141) |
|
lin (0.291206) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ova (0.258264) |
|
mgp (0.230681) |
|
hea (0.204499) |
|
sag (0.182715) |
|
fty (0.17584) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
liv (1.02399) |
|
thg (0.887536) |
|
cte (0.58548) |
|
gul (0.532765) |
|
pro (0.512033) |
|
aor (0.390549) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
cmu (0.372787) |
|
tra (0.369276) |
|
ton (0.351) |
|
rec (0.346141) |
|
lin (0.291206) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ova (0.258264) |
|
mgp (0.230681) |
|
hea (0.204499) |
|
sag (0.182715) |
|
fty (0.17584) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
