Ss1.1-rhlv24b_m22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTCGCCCTGGTCCTGGCGCTGGCCGCGGGGCTCCGCGCAGCCGGGCCCGGGCAGACGC CGCGCCCCGCCGAGCGGGGGCCCCCGGTGCGGCTCTTCACGGAGGAGGAGCTGGCCCGCT ACGGCGGGGACGAGGAAGATCAGCCCATCTACATGGCAGTCAAAGGGGTGGTGTTTGATG TCACTTCGGGAAAGGAGTTCTATGGACGAGGAGCCCCCTACAACGCCTTGACCGGGAAGG ACTCCACCAGAGGGGTAGCCAAGATGTCCCTGGACCCTGCAGACCTCACCCATGACACTA CGGGCCTCACGGCCGAGGAGCTGCAGTCCCTGGATGACGTCTTCACCAGAGTGTACAAAG CCAAATATCCCATCGTCGGCTACACGGCCCGGAGAATTCTCAATGAGGACGGCAGCCCCA ACCTGGACTTCAAGCCTGAAGACCAGCCCCATTTTGACATAAAGGACGAGTTCTGACGTC CCGTCTGCCGGACCACGTTCTTTCGAGGGTGCGGCAGGGAGACACTCAGGGCAAAATCCC CTGAAGAAGAGGCTGCTTGAGCCTCTGGTCACCAGCCCCGAATAAAGCAGACGTTTAGCC CGGATCGCTGAGCGCCCTCATTGCCCTTGAGCAGGTGCTCTGCCCCCCTGCCTGCACAGC AGCCAGCTGGGAATAGCAGCCGAGGGGACACCTCCTAGGTGTCATCGTGGGCGTCGGGGG TGGAGCAATTACGAGTGACCTTTATTTCTTCTTTATATTGCTCTCTACTTGCCAAGTTTT CAACAGTGACCGTGTTTACGTCAGAATAAACACCAAAATAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTCGCCCTGGTCCTGGCGCTGGCCGCGGGGCTCCGCGCAGCCGGGCCCGGGCAGACGC CGCGCCCCGCCGAGCGGGGGCCCCCGGTGCGGCTCTTCACGGAGGAGGAGCTGGCCCGCT ACGGCGGGGACGAGGAAGATCAGCCCATCTACATGGCAGTCAAAGGGGTGGTGTTTGATG TCACTTCGGGAAAGGAGTTCTATGGACGAGGAGCCCCCTACAACGCCTTGACCGGGAAGG ACTCCACCAGAGGGGTAGCCAAGATGTCCCTGGACCCTGCAGACCTCACCCATGACACTA CGGGCCTCACGGCCGAGGAGCTGCAGTCCCTGGATGACGTCTTCACCAGAGTGTACAAAG CCAAATATCCCATCGTCGGCTACACGGCCCGGAGAATTCTCAATGAGGACGGCAGCCCCA ACCTGGACTTCAAGCCTGAAGACCAGCCCCATTTTGACATAAAGGACGAGTTCTGACGTC CCGTCTGCCGGACCACGTTCTTTCGAGGGTGCGGCAGGGAGACACTCAGGGCAAAATCCC CTGAAGAAGAGGCTGCTTGAGCCTCTGGTCACCAGCCCCGAATAAAGCAGACGTTTAGCC CGGATCGCTGAGCGCCCTCATTGCCCTTGAGCAGGTGCTCTGCCCCCCTGCCTGCACAGC AGCCAGCTGGGAATAGCAGCCGAGGGGACACCTCCTAGGTGTCATCGTGGGCGTCGGGGG TGGAGCAATTACGAGTGACCTTTATTTCTTCTTTATATTGCTCTCTACTTGCCAAGTTTT CAACAGTGACCGTGTTTACGTCAGAATAAACACCAAAATAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 339-458, - strand, RNAz p=0.510721 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 339-458, - strand, RNAz p=0.510721 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-135, gnl|bosTau2|chr16 (53193042-53192908) | |
| 1-135, gnl|Hg17|chr1 (208994724-208994858) | |
| 1-135, gnl|Mm7|chr1 (190871564-190871424) | |
| 195-298, gnl|bosTau2|chr16 (53188127-53188024) | |
| 195-298, gnl|canFam2|chr7 (13583023-13583158) | |
| 195-298, gnl|canFam2|chr7 (13583028-13583128) | |
| 195-298, gnl|danRer3|chrUn (183443521-183443409) | |
| 195-298, gnl|danRer3|chrUn (183443516-183443415) | |
| 195-298, gnl|dasNov1|scaffold_5533 (81627-81494) | |
| 195-298, gnl|dasNov1|scaffold_5533 (81624-81523) | |
| 195-298, gnl|galGal2|chr3 (18267940-18267814) | |
| 195-298, gnl|hg17|chr1 (209006073-209006208) | |
| 195-298, gnl|Hg17|chr1 (209006075-209006178) | |
| 195-298, gnl|hg17|chr12 (100860306-100860407) | |
| 195-298, gnl|mm7|chr1 (190863533-190863401) | |
| 195-298, gnl|Mm7|chr1 (190863529-190863426) | |
| 195-298, gnl|mm7|chr9 (119942738-119942840) | |
| 195-298, gnl|monDom2|scaffold_13 (16323837-16323951) | |
| 195-298, gnl|monDom2|scaffold_13 (16323842-16323943) | |
| 195-298, gnl|oryCun1|scaffold_188890 (66636-66501) | |
| 195-298, gnl|oryCun1|scaffold_188890 (66631-66530) | |
| 195-298, gnl|panTro1|chr1 (192644454-192644589) | |
| 195-298, gnl|panTro1|chr10 (103323487-103323590) | |
| 195-298, gnl|rheMac2|chr1 (157961683-157961547) | |
| 195-298, gnl|rheMac2|chr11 (103171370-103171471) | |
| 195-298, gnl|rn3|chr13 (107559012-107558880) | |
| 195-298, gnl|rn3|chr13 (107559007-107558907) | |
| 195-298, gnl|tetNig1|chr10 (11798537-11798662) | |
| 195-298, gnl|tetNig1|chr10 (11798542-11798643) | |
| 195-298, gnl|xenTro1|scaffold_68 (1385047-1384910) | |
| 300-822, gnl|bosTau2|chr16 (53187075-53186549) | |
| 300-822, gnl|Hg17|chr1 (209007567-209008095) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-135, gnl|bosTau2|chr16 (53193042-53192908) | |
| 1-135, gnl|Hg17|chr1 (208994724-208994858) | |
| 1-135, gnl|Mm7|chr1 (190871564-190871424) | |
| 195-298, gnl|bosTau2|chr16 (53188127-53188024) | |
| 195-298, gnl|canFam2|chr7 (13583023-13583158) | |
| 195-298, gnl|canFam2|chr7 (13583028-13583128) | |
| 195-298, gnl|danRer3|chrUn (183443521-183443409) | |
| 195-298, gnl|danRer3|chrUn (183443516-183443415) | |
| 195-298, gnl|dasNov1|scaffold_5533 (81627-81494) | |
| 195-298, gnl|dasNov1|scaffold_5533 (81624-81523) | |
| 195-298, gnl|galGal2|chr3 (18267940-18267814) | |
| 195-298, gnl|hg17|chr1 (209006073-209006208) | |
| 195-298, gnl|Hg17|chr1 (209006075-209006178) | |
| 195-298, gnl|hg17|chr12 (100860306-100860407) | |
| 195-298, gnl|mm7|chr1 (190863533-190863401) | |
| 195-298, gnl|Mm7|chr1 (190863529-190863426) | |
| 195-298, gnl|mm7|chr9 (119942738-119942840) | |
| 195-298, gnl|monDom2|scaffold_13 (16323837-16323951) | |
| 195-298, gnl|monDom2|scaffold_13 (16323842-16323943) | |
| 195-298, gnl|oryCun1|scaffold_188890 (66636-66501) | |
| 195-298, gnl|oryCun1|scaffold_188890 (66631-66530) | |
| 195-298, gnl|panTro1|chr1 (192644454-192644589) | |
| 195-298, gnl|panTro1|chr10 (103323487-103323590) | |
| 195-298, gnl|rheMac2|chr1 (157961683-157961547) | |
| 195-298, gnl|rheMac2|chr11 (103171370-103171471) | |
| 195-298, gnl|rn3|chr13 (107559012-107558880) | |
| 195-298, gnl|rn3|chr13 (107559007-107558907) | |
| 195-298, gnl|tetNig1|chr10 (11798537-11798662) | |
| 195-298, gnl|tetNig1|chr10 (11798542-11798643) | |
| 195-298, gnl|xenTro1|scaffold_68 (1385047-1384910) | |
| 300-822, gnl|bosTau2|chr16 (53187075-53186549) | |
| 300-822, gnl|Hg17|chr1 (209007567-209008095) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nms (0.213858) | |
| hea (0.204499) | |
| cut (0.169924) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nms (0.213858) | |
| hea (0.204499) | |
| cut (0.169924) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) |