Non-Coding RNA Search

Ss1.1-rhlv25b_g24.5

Sequence:


               
               GGGAGCCACTATTACAGAAGAGACGGTGCCCTCTAGTACCTCGGGGTCTTTGTATGTTCT
TCGTCTGCTTGGAATCCTTTTTCCATGACCTTCCCCGTATCCTCCAGGTCTCAGCTCAGA
AGTTCCTTCCTCTGGGCTGGGGGCCCCGGGAGAGCACTTGGTATGCTGTGTTAGAGGTGC
CCATCTTCCCATCTGTCTGCCCCGTGAGACTGTAAGTTCTATGAGGGCAGGGCCTATGTC
TGATTTGTTTTGCAGTATTTTCTTAGGGCCAAACACATTCCCTAGAGCCTAGAGAGAGTT
CCAAAATTATTTGTTGAATGTATTGAACAAGTGAATGTTATATAAGACCCAGAAAAAAGT
CATCAGTGACCTGATGGTAAAATGATAGTTTTGAGTCTCTGAATTGGTTATACAGCCTTA
ATAATGGTAATTACTTAGATTCATTTTTCTTATTTTTATCTCAAGAGCCATTGTTTTCTC
TCAATAGTAATACCTTACTGGTTTCTGAACTTTCCAAATTGCATTTAGTGTTAGTTATCT
TTGAACAATAACCAAGTATGAAAAAAAACCTTATAATTCAAGCTGTTGCTTTAACCCTTT
GTACTCCCTAAAGAATATATTTTTATGTAGATTAAACTGTATGTTTTTAATTAGAACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCCACTATTACAGAAGAGACGGTGCCCTCTAGTACCTCGGGGTCTTTGTATGTTCT
TCGTCTGCTTGGAATCCTTTTTCCATGACCTTCCCCGTATCCTCCAGGTCTCAGCTCAGA
AGTTCCTTCCTCTGGGCTGGGGGCCCCGGGAGAGCACTTGGTATGCTGTGTTAGAGGTGC
CCATCTTCCCATCTGTCTGCCCCGTGAGACTGTAAGTTCTATGAGGGCAGGGCCTATGTC
TGATTTGTTTTGCAGTATTTTCTTAGGGCCAAACACATTCCCTAGAGCCTAGAGAGAGTT
CCAAAATTATTTGTTGAATGTATTGAACAAGTGAATGTTATATAAGACCCAGAAAAAAGT
CATCAGTGACCTGATGGTAAAATGATAGTTTTGAGTCTCTGAATTGGTTATACAGCCTTA
ATAATGGTAATTACTTAGATTCATTTTTCTTATTTTTATCTCAAGAGCCATTGTTTTCTC
TCAATAGTAATACCTTACTGGTTTCTGAACTTTCCAAATTGCATTTAGTGTTAGTTATCT
TTGAACAATAACCAAGTATGAAAAAAAACCTTATAATTCAAGCTGTTGCTTTAACCCTTT
GTACTCCCTAAAGAATATATTTTTATGTAGATTAAACTGTATGTTTTTAATTAGAACTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr24 (7236775-7237448)
               

               
               1-660, gnl|Hg17|chr7 (122872646-122873328)
               

               
               1-660, gnl|Mm7|chr6 (24515706-24516332)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr24 (7236775-7237448)
               

               
               1-660, gnl|Hg17|chr7 (122872646-122873328)
               

               
               1-660, gnl|Mm7|chr6 (24515706-24516332)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ldo (0.0970026)

	1-660, gnl\|bosTau2\|chr24 (7236775-7237448)
	1-660, gnl\|Hg17\|chr7 (122872646-122873328)
	1-660, gnl\|Mm7\|chr6 (24515706-24516332)

	bfe (0.449573)
	vin (0.332557)
	hlv (0.139256)
	che (0.136314)
	ldo (0.0970026)